Publications

Proteomics Platform

The HLA-II immunopeptidome of SARS-CoV-2.

Weingarten-Gabbay S, Chen DY, Sarkizova S, et al. The HLA-II immunopeptidome of SARS-CoV-2. Cell reports. 2023;43(1):113596. doi:10.1016/j.celrep.2023.113596

Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors and metastases.

Jailkhani N, Clauser KR, Mak HH, et al. Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors and metastases. Cancer research. 2023. doi:10.1158/0008-5472.CAN-22-1532

Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling.

Weingarten-Gabbay S, Bauer MR, Stanton AC, et al. Pan-viral ORFs discovery using Massively Parallel Ribosome Profiling. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.09.26.559641

Dynamic regulation of inter-organelle communication by ubiquitylation controls skeletal muscle development and disease onset.

Mansur A, Joseph R, Kim E, et al. Dynamic regulation of inter-organelle communication by ubiquitylation controls skeletal muscle development and disease onset. eLife. 2023;12. doi:10.7554/eLife.81966

Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry.

Phulphagar KM, Ctortecka C, Jacome ASV, et al. Sensitive, high-throughput HLA-I and HLA-II immunopeptidomics using parallel accumulation-serial fragmentation mass spectrometry. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.03.10.532106

Protein phosphatase 1 regulates core PCP signaling.

Song S, Cho B, Weiner AT, et al. Protein phosphatase 1 regulates core PCP signaling. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.09.12.556998

Deep proteomics identifies shared molecular pathway alterations in synapses of patients with schizophrenia and bipolar disorder and mouse model.

Aryal S, Bonanno K, Song B, et al. Deep proteomics identifies shared molecular pathway alterations in synapses of patients with schizophrenia and bipolar disorder and mouse model. Cell reports. 2023;42(5):112497. doi:10.1016/j.celrep.2023.112497

Integrated Immunopeptidomic and Proteomic Analysis of COVID-19 lung biopsies.

Yin S, Klaeger S, Chea VA, et al. Integrated Immunopeptidomic and Proteomic Analysis of COVID-19 lung biopsies. Frontiers in immunology. 2023;14:1269335. doi:10.3389/fimmu.2023.1269335

The HLA-II immunopeptidome of SARS-CoV-2.

Weingarten-Gabbay S, Chen DY, Sarkizova S, et al. The HLA-II immunopeptidome of SARS-CoV-2. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.05.26.542482

ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer.

Mota I, Patrucco E, Mastini C, et al. ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer. Nature cancer. 2023. doi:10.1038/s43018-023-00591-2

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Proteomics Platform

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