Rajachandran S, Xu Q, Cao Q, et al. Subcellular level spatial transcriptomics with PHOTON. Nature communications. 2025;16(1):4457. doi:10.1038/s41467-025-59801-3
Publications
Tan J, Fu X, Ling X, et al. Multimodal learning decodes the global binding landscape of chromatin-associated proteins. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.17.670761
Luthra I, Priyadarshi S, Guo R, et al. GAME: Genomic API for Model Evaluation. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.04.663250
Labade AS, Chiang ZD, Comenho C, et al. Expansion in situ genome sequencing links nuclear abnormalities to aberrant chromatin regulation. Science (New York, N.Y.). 2025;389(6758):eadt2781. doi:10.1126/science.adt2781
Nollmann M, Hansen AS. Editorial overview: Emerging perspectives in genome architecture and gene regulation. Current opinion in genetics & development. 2025;93:102355. doi:10.1016/j.gde.2025.102355
Zhang Z, Bao X, Jiang L, et al. Developing a general AI model for integrating diverse genomic modalities and comprehensive genomic knowledge. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.08.652986
Huang H, Baxter AE, Zhang Z, et al. Deciphering the role of histone modifications in memory and exhausted CD8 T cells. Scientific reports. 2025;15(1):17359. doi:10.1038/s41598-025-99804-0
Roseman SA, Siegenfeld AP, Lee C, Lue NZ, Waterbury AL, Liau BB. DNA methylation insulates genic regions from CTCF loops near nuclear speckles. eLife. 2025;13. doi:10.7554/eLife.102930
Liu Z, Zhang S, James BT, et al. Single-cell multiregion epigenomic rewiring in Alzheimer’s disease progression and cognitive resilience. Cell. 2025;188(18):4980-5002.e29. doi:10.1016/j.cell.2025.06.031
Hoover PJ, Raparia C, Lieb DJ, et al. A human-mouse atlas of intrarenal myeloid cells identifies conserved disease-associated macrophages in lupus nephritis. The Journal of experimental medicine. 2025;222(11). doi:10.1084/jem.20241873