Publications

A scalable proteogenomic framework for dissecting phospho-signaling pathways in primary immune cells.

Beusch CM, Morningstar C, Semaan M, et al. A scalable proteogenomic framework for dissecting phospho-signaling pathways in primary immune cells. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.10.08.681012

PMCID

PMC12632528

Accelerating scRNA-seq Analysis: Automated cell type annotation using representation learning and vector search.

Williams SR, Grab F, Kamath GM, et al. Accelerating scRNA-seq Analysis: Automated cell type annotation using representation learning and vector search. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.10.06.680787

PMCID

PMC12632476

cubic: CUDA-accelerated 3D Bioimage Computing.

Kalinin AA, Carpenter AE, Singh S, O’Meara MJ. cubic: CUDA-accelerated 3D Bioimage Computing. ArXiv. 2025.

PMCID

PMC12633162

Divergent T Cell Phenotypes Define Pediatric Crohn's Disease and Ulcerative Colitis.

Nettey L, Zheng HB, Devlin JC, et al. Divergent T Cell Phenotypes Define Pediatric Crohn’s Disease and Ulcerative Colitis. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.10.16.25336112

PMCID

PMC12633124

SARS-CoV-2 Serosurveillance Reveals Pre-pandemic Cross-Reactivity and Pandemic Seroprevalence Trends in Senegal.

Sy M, Baudi I, Ndiaye IM, et al. SARS-CoV-2 Serosurveillance Reveals Pre-pandemic Cross-Reactivity and Pandemic Seroprevalence Trends in Senegal. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.10.20.25337295

PMCID

PMC12633569

Symptoms of problematic alcohol use differ in their genetic associations with comorbid internalizing, externalizing, and neurodevelopmental psychiatric disorders.

Wang FL, Maher D, Bustamante D, Bountress KE. Symptoms of problematic alcohol use differ in their genetic associations with comorbid internalizing, externalizing, and neurodevelopmental psychiatric disorders. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.10.20.25336759

PMCID

PMC12633565

FuFiHLA: A tool for Full-Field HLA typing from long reads data.

Hu J, Qin Q, Li H, Zhou Y. FuFiHLA: A tool for Full-Field HLA typing from long reads data. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.10.23.684216

PMCID

PMC12633391

Braking the system: the aryl hydrocarbon receptor controls monocytes in homeostasis.

Kenison JE, Quintana FJ. Braking the system: the aryl hydrocarbon receptor controls monocytes in homeostasis. The Journal of clinical investigation. 2025;135(23). doi:10.1172/JCI199952

Developmental Selective GSK3α Inhibition Rescues Working Memory Deficits in a Mouse Model of Schizophrenia Predisposition.

Passecker J, Aloimonos CM, Dagunts A, et al. Developmental Selective GSK3α Inhibition Rescues Working Memory Deficits in a Mouse Model of Schizophrenia Predisposition. Complex psychiatry. 2025;11(1):131-141. doi:10.1159/000547800

PMCID

PMC12659633

Multi-omics, histologic, and scRNA-seq profiling of pleural mesothelioma reveals negative prognosis associated with a novel uncommitted molecular phenotype.