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Publications

LRP2 Expression in Melanoma Is Associated With a Transitory Cell State, Increased T Cell Infiltration, and Is Upregulated by IFNy Signaling.

Rasmussen MQ, Bønnelykke-Behrndtz ML, Merrild C, et al. LRP2 Expression in Melanoma Is Associated With a Transitory Cell State, Increased T Cell Infiltration, and Is Upregulated by IFNy Signaling. Pigment cell & melanoma research. 2025;38(5):e70053. doi:10.1111/pcmr.70053

Portal vein-enriched metabolites as intermediate regulators of the gut microbiome in insulin resistance.

Muñoz VR, Moreau F, Soto M, et al. Portal vein-enriched metabolites as intermediate regulators of the gut microbiome in insulin resistance. Cell metabolism. 2025. doi:10.1016/j.cmet.2025.08.005

The airway-brain axis: Connecting breath, brain, and behavior.

Blackwell VK, Van Goor JJ, Prescott SL. The airway-brain axis: Connecting breath, brain, and behavior. Cell reports. 2025;44(9):116239. doi:10.1016/j.celrep.2025.116239

Corrigendum to "The Dietary Biomarkers Development Consortium: An Initiative for Discovery and Validation of Dietary Biomarkers for Precision Nutrition. [Current Developments in Nutrition, Volume 9, Issue 5, May 2025, 107435]".

Chakraborty H, Sun Q, Bhupathiraju SN, et al. Corrigendum to "The Dietary Biomarkers Development Consortium: An Initiative for Discovery and Validation of Dietary Biomarkers for Precision Nutrition. [Current Developments in Nutrition, Volume 9, Issue 5, May 2025, 107435]". Current developments in nutrition. 2025;9(8):107517. doi:10.1016/j.cdnut.2025.107517

Adverse Outcome Pathways Applied to Space Radiation Research.

Chauhan V, Grybas VS, Hoopfer D, et al. Adverse Outcome Pathways Applied to Space Radiation Research. Environmental and molecular mutagenesis. 2025. doi:10.1002/em.70031

Multi-omic analysis reveals a key BCAT1 role in mTOR activation by B-cell receptor and TLR9.

Guo R, Sun Y, Lim MY, et al. Multi-omic analysis reveals a key BCAT1 role in mTOR activation by B-cell receptor and TLR9. The Journal of clinical investigation. 2025. doi:10.1172/JCI186258

Warp analysis research pipelines: cloud-optimized workflows for biological data processing and reproducible analysis.

Degatano K, Awdeh A, Cox RS, et al. Warp analysis research pipelines: cloud-optimized workflows for biological data processing and reproducible analysis. Bioinformatics (Oxford, England). 2025;41(10). doi:10.1093/bioinformatics/btaf494

Combinatorial prediction of therapeutic perturbations using causally inspired neural networks.

Gonzalez G, Lin X, Herath I, Veselkov K, Bronstein M, Zitnik M. Combinatorial prediction of therapeutic perturbations using causally inspired neural networks. Nature biomedical engineering. 2025. doi:10.1038/s41551-025-01481-x

Antibody-bottlebrush prodrug conjugates for targeted cancer therapy.

Liu B, Nguyen HVT, Jiang Y, et al. Antibody-bottlebrush prodrug conjugates for targeted cancer therapy. Nature biotechnology. 2025. doi:10.1038/s41587-025-02772-z

Learning ecosystem-scale dynamics from microbiome data with MDSINE2.

Gibson TE, Kim Y, Acharya S, et al. Learning ecosystem-scale dynamics from microbiome data with MDSINE2. Nature microbiology. 2025;10(10):2550-2564. doi:10.1038/s41564-025-02112-6