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Publications

Gene expression inference with deep learning.

Chen Y, Li Y, Narayan R, Subramanian A, Xie X. Gene expression inference with deep learning. Bioinformatics. 2016;32(12):1832-9. doi:10.1093/bioinformatics/btw074

High-throughput approaches to unravel hepatitis C virus-host interactions.

Colpitts CC, El-Saghire H, Pochet N, Schuster C, Baumert TF. High-throughput approaches to unravel hepatitis C virus-host interactions. Virus Res. 2016;218:18-24. doi:10.1016/j.virusres.2015.09.013

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability.

Yassour M, Vatanen T, Siljander H, et al. Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability. Sci Transl Med. 2016;8(343):343ra81. doi:10.1126/scitranslmed.aad0917

Rhinovirus and serum IgE are associated with acute asthma exacerbation severity in children.

Kantor DB, Stenquist N, McDonald MC, et al. Rhinovirus and serum IgE are associated with acute asthma exacerbation severity in children. J Allergy Clin Immunol. 2016. doi:10.1016/j.jaci.2016.04.044

MAPK activation and HRAS mutation identified in pituitary spindle cell oncocytoma.

Miller MB, Bi WL, Ramkissoon LA, et al. MAPK activation and HRAS mutation identified in pituitary spindle cell oncocytoma. Oncotarget. 2016;7(24):37054-37063. doi:10.18632/oncotarget.9244

Corrigendum: Optogenetic dissection of ictal propagation in the hippocampal-entorhinal cortex structures.

Lu Y, Zhong C, Wang L, et al. Corrigendum: Optogenetic dissection of ictal propagation in the hippocampal-entorhinal cortex structures. Nat Commun. 2016;7:12019. doi:10.1038/ncomms12019

Large-Scale Production of Mature Neurons from Human Pluripotent Stem Cells in a Three-Dimensional Suspension Culture System.

Rigamonti A, Repetti GG, Sun C, et al. Large-Scale Production of Mature Neurons from Human Pluripotent Stem Cells in a Three-Dimensional Suspension Culture System. Stem Cell Reports. 2016;6(6):993-1008. doi:10.1016/j.stemcr.2016.05.010

TRIM24 Is an Oncogenic Transcriptional Activator in Prostate Cancer.

Groner AC, Cato L, de Tribolet-Hardy J, et al. TRIM24 Is an Oncogenic Transcriptional Activator in Prostate Cancer. Cancer Cell. 2016;29(6):846-58. doi:10.1016/j.ccell.2016.04.012

A global map of genetic diversity in Babesia microti reveals strong population structure and identifies variants associated with clinical relapse.

Lemieux JE, Tran AD, Freimark L, et al. A global map of genetic diversity in Babesia microti reveals strong population structure and identifies variants associated with clinical relapse. Nat Microbiol. 2016;1(7):16079. doi:10.1038/nmicrobiol.2016.79

The genetic history of Ice Age Europe.

Fu Q, Posth C, Hajdinjak M, et al. The genetic history of Ice Age Europe. Nature. 2016;534(7606):200-5. doi:10.1038/nature17993