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Publications

Rare germline disorders implicate long non-coding RNAs disrupted by chromosomal structural rearrangements.

Andersen RE, Alkuraya IF, Ajeesh A, et al. Rare germline disorders implicate long non-coding RNAs disrupted by chromosomal structural rearrangements. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.06.16.24307499

Tryptophan-Kynurenine Pathway Activation and Cognition in Virally Suppressed Women With HIV.

Shorer EF, Dastgheyb RM, French AL, et al. Tryptophan-Kynurenine Pathway Activation and Cognition in Virally Suppressed Women With HIV. Journal of acquired immune deficiency syndromes (1999). 2024;96(5):494-500. doi:10.1097/QAI.0000000000003454

IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus.

Guney MH, Nagalekshmi K, McCauley SM, Carbone C, Aydemir O, Luban J. IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(29):e2404349121. doi:10.1073/pnas.2404349121

CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias.

Vedula RS, Karp HQ, Koob J, et al. CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias. Blood. 2024. doi:10.1182/blood.2023022908

Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue.

Venkat A, Carlino MJ, Lawton BR, et al. Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research. 2024. doi:10.1101/gr.278215.123

Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications.

Ctortecka C, Clark NM, Boyle BW, et al. Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications. Nature communications. 2024;15(1):5707. doi:10.1038/s41467-024-49651-w

A systematic review and meta-analysis of nonrelapse mortality after CAR T cell therapy.

Santos DMCD, Tix T, Shouval R, et al. A systematic review and meta-analysis of nonrelapse mortality after CAR T cell therapy. Nature medicine. 2024. doi:10.1038/s41591-024-03084-6

Detection of allele-specific expression in spatial transcriptomics with spASE.

Zou LS, Cable DM, Barrera-Lopez IA, et al. Detection of allele-specific expression in spatial transcriptomics with spASE. Genome biology. 2024;25(1):180. doi:10.1186/s13059-024-03317-4

Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data.

Seal S, Williams D, Hosseini-Gerami L, et al. Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data. Chemical research in toxicology. 2024. doi:10.1021/acs.chemrestox.4c00015

Publisher Correction: MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch.

Jakobsen ST, Jensen RAM, Madsen MS, et al. Publisher Correction: MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch. Nature genetics. 2024. doi:10.1038/s41588-024-01856-x