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Publications

Jaxkineticmodel: Neural ordinary differential equations inspired parameterization of kinetic models.

van Lent P, Bunkova O, Magyar B, Planken L, Schmitz J, Abeel T. Jaxkineticmodel: Neural ordinary differential equations inspired parameterization of kinetic models. PLoS computational biology. 2025;21(7):e1012733. doi:10.1371/journal.pcbi.1012733

Conserved missense variant pathogenicity and correlated phenotypes across paralogous genes.

Brünger T, Ivaniuk A, Pérez-Palma E, et al. Conserved missense variant pathogenicity and correlated phenotypes across paralogous genes. Genome biology. 2025;26(1):197. doi:10.1186/s13059-025-03663-x

Resting-State Functional Connectivity With the Anterior and Posterior Hippocampus: An Analysis of fMRI Data From the Human Connectome Project.

Fritch HA, Steinkrauss AC, Slotnick SD. Resting-State Functional Connectivity With the Anterior and Posterior Hippocampus: An Analysis of fMRI Data From the Human Connectome Project. Hippocampus. 2025;35(4):e70023. doi:10.1002/hipo.70023

Advances in the Understanding of Richter Transformation.

Thompson PA, Parry EM. Advances in the Understanding of Richter Transformation. Hematology/oncology clinics of North America. 2025. doi:10.1016/j.hoc.2025.05.011

Microglia as critical mediators linking perinatal immune stress to mental health trajectories.

Raju RM, Smith CJ. Microglia as critical mediators linking perinatal immune stress to mental health trajectories. Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 2025. doi:10.1038/s41386-025-02162-8

Inflammatory macrophages associate with tissue injury and fibrosis in a mouse model of tuberculosis.

Boucau J, Castillo JR, Naidoo T, et al. Inflammatory macrophages associate with tissue injury and fibrosis in a mouse model of tuberculosis. The Journal of infectious diseases. 2025. doi:10.1093/infdis/jiaf361

Genomics reveals eleven obesity endotypes with distinct biological and phenotypic signatures.

Kim MS, Song M, Kim H, et al. Genomics reveals eleven obesity endotypes with distinct biological and phenotypic signatures. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.06.30.25330607

PROFET Predicts Continuous Gene Expression Dynamics from scRNA-seq Data to Elucidate Heterogeneity of Cancer Treatment Responses.

Cheng YC, Gu H, McDonald TO, et al. PROFET Predicts Continuous Gene Expression Dynamics from scRNA-seq Data to Elucidate Heterogeneity of Cancer Treatment Responses. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.06.27.662030

Sideroflexins enable mitochondrial transport of polar neutral amino acids.

Block S, Chi F, Rosen PC, et al. Sideroflexins enable mitochondrial transport of polar neutral amino acids. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.06.18.660357

Polyamines buffer labile iron to suppress ferroptosis.

Sharma P, Keys HR, Müller S, et al. Polyamines buffer labile iron to suppress ferroptosis. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.06.30.662349