He C, Zhang J, Dahleh M, Uhler C. MORPH Predicts the Single-Cell Outcome of Genetic Perturbations Across Conditions and Data Modalities. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.06.27.661992
Publications
Ivankovic F, Yu D, Shen J, et al. MarkerMatch: A Proximity-Based Probe-Matching Algorithm for Joint Analysis of Copy-Number Variants from Different Genotyping Arrays. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.06.30.662249
Liu T, Huang T, Jin W, Chu T, Ying R, Zhao H. spRefine Denoises and Imputes Spatial Transcriptomics with a Reference-Free Framework Powered by Genomic Language Model. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.04.22.649977
Gear R, Kalitsis P, Glass M, et al. AP2M1 Is a Candidate Gene for Microcephaly and Intellectual Disability in 3q27.1 Deletions. American journal of medical genetics. Part A. 2025:e64153. doi:10.1002/ajmg.a.64153
Likasitwatanakul P, Li Z, Doan P, et al. Chemical Perturbations Impacting Histone Acetylation Govern Colorectal Cancer Differentiation. Gastroenterology. 2025. doi:10.1053/j.gastro.2025.07.003
Ibrahim MK, Cohen R, Chhibba T, et al. An International Multicenter Study of Native and Immigrant South Asian Crohn’s Disease. Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association. 2025. doi:10.1016/j.cgh.2025.06.022
Semaan K, Nawfal R, Canniff J, et al. Plasma epigenomic profiling reveals treatment-emergent squamous transformation in prostate cancer. NPJ precision oncology. 2025;9(1):233. doi:10.1038/s41698-025-01031-3
Fecho K, Glusman G, Baranzini SE, et al. Announcing the Biomedical Data Translator: Initial Public Release. Clinical and translational science. 2025;18(7):e70284. doi:10.1111/cts.70284
Ewing AG, Joffe D, Blitshteyn S, et al. Correction: Long COVID clinical evaluation, research and impact on society: a global expert consensus. Annals of clinical microbiology and antimicrobials. 2025;24(1):41. doi:10.1186/s12941-025-00803-w
Nardone C, Mintseris J, He D, et al. A heterotrimeric protein complex assembles the metazoan V-ATPase upon dissipation of proton gradients. Nature structural & molecular biology. 2025. doi:10.1038/s41594-025-01610-9