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Publications

Detection of allele-specific expression in spatial transcriptomics with spASE.

Zou LS, Cable DM, Barrera-Lopez IA, et al. Detection of allele-specific expression in spatial transcriptomics with spASE. Genome biology. 2024;25(1):180. doi:10.1186/s13059-024-03317-4

Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data.

Seal S, Williams D, Hosseini-Gerami L, et al. Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data. Chemical research in toxicology. 2024. doi:10.1021/acs.chemrestox.4c00015

Publisher Correction: MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch.

Jakobsen ST, Jensen RAM, Madsen MS, et al. Publisher Correction: MYC activity at enhancers drives prognostic transcriptional programs through an epigenetic switch. Nature genetics. 2024. doi:10.1038/s41588-024-01856-x

Publisher Correction: Understanding the genetic complexity of puberty timing across the allele frequency spectrum.

Kentistou KA, Kaisinger LR, Stankovic S, et al. Publisher Correction: Understanding the genetic complexity of puberty timing across the allele frequency spectrum. Nature genetics. 2024. doi:10.1038/s41588-024-01857-w

Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time.

Ndiaye YD, Wong W, Thwing J, et al. Two decades of molecular surveillance in Senegal reveal rapid changes in known drug resistance mutations over time. Malaria journal. 2024;23(1):205. doi:10.1186/s12936-024-05024-8

Multi-scale signaling and tumor evolution in high-grade gliomas.

Liu J, Cao S, Imbach KJ, et al. Multi-scale signaling and tumor evolution in high-grade gliomas. Cancer cell. 2024;42(7):1217-1238.e19. doi:10.1016/j.ccell.2024.06.004

CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias.

Vedula RS, Karp HQ, Koob J, et al. CRISPR-based rapid molecular diagnostic tests for fusion-driven leukemias. Blood. 2024. doi:10.1182/blood.2023022908

Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue.

Venkat A, Carlino MJ, Lawton BR, et al. Single-cell analysis reveals transcriptional dynamics in healthy primary parathyroid tissue. Genome research. 2024. doi:10.1101/gr.278215.123

Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries.

Piperni E, Nguyen LH, Manghi P, et al. Intestinal Blastocystis is linked to healthier diets and more favorable cardiometabolic outcomes in 56,989 individuals from 32 countries. Cell. 2024. doi:10.1016/j.cell.2024.06.018

Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications.

Ctortecka C, Clark NM, Boyle BW, et al. Automated single-cell proteomics providing sufficient proteome depth to study complex biology beyond cell type classifications. Nature communications. 2024;15(1):5707. doi:10.1038/s41467-024-49651-w