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Publications

GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells.

Zhou T, Zhang R, Jia D, et al. GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells. Nature genetics. 2024. doi:10.1038/s41588-024-01745-3

The aged tumor microenvironment limits T cell control of cancer.

C Y Chen A, Jaiswal S, Martinez D, et al. The aged tumor microenvironment limits T cell control of cancer. Nature immunology. 2024. doi:10.1038/s41590-024-01828-7

A resampling-based approach to share reference panels.

Cavinato T, Rubinacci S, Malaspinas AS, Delaneau O. A resampling-based approach to share reference panels. Nature computational science. 2024. doi:10.1038/s43588-024-00630-7

Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci.

Strom NI, Gerring ZF, Galimberti M, et al. Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.03.13.24304161

A cross ancestry genetic study of psychiatric disorders from India.

Holla B, Mahadevan J, Ganesh S, et al. A cross ancestry genetic study of psychiatric disorders from India. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.04.25.24306377

Nutrition markers and discharge outcome in deep and lobar intracerebral hemorrhage.

Duskin J, Yechoor N, Singh S, et al. Nutrition markers and discharge outcome in deep and lobar intracerebral hemorrhage. European stroke journal. 2024:23969873241253048. doi:10.1177/23969873241253048

Drivers Underlying Metastasis and Relapse in Medulloblastoma and Targeting Strategies.

Holmberg KO, Borgenvik A, Zhao M, Giraud G, Swartling FJ. Drivers Underlying Metastasis and Relapse in Medulloblastoma and Targeting Strategies. Cancers. 2024;16(9). doi:10.3390/cancers16091752

Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains.

Stanley S, Spaulding CN, Liu Q, et al. Identification of bacterial determinants of tuberculosis infection and treatment outcomes: a phenogenomic analysis of clinical strains. The Lancet. Microbe. 2024. doi:10.1016/S2666-5247(24)00022-3

Analysis of 3D pathology samples using weakly supervised AI.

Song AH, Williams M, Williamson DFK, et al. Analysis of 3D pathology samples using weakly supervised AI. Cell. 2024;187(10):2502-2520.e17. doi:10.1016/j.cell.2024.03.035

A reference-point-method-based online proton treatment plan re-optimization strategy and a novel solution to planning constraint infeasibility problem.

Qiu Z, Depauw N, Gorissen BL, et al. A reference-point-method-based online proton treatment plan re-optimization strategy and a novel solution to planning constraint infeasibility problem. Physics in medicine and biology. 2024. doi:10.1088/1361-6560/ad4a00