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Publications

Defining and benchmarking open problems in single-cell analysis.

Luecken MD, Gigante S, Burkhardt DB, et al. Defining and benchmarking open problems in single-cell analysis. Research square. 2024. doi:10.21203/rs.3.rs-4181617/v1

Weighting estimation in the cause-specific Cox regression with partially missing causes of failure.

Lee J, Ogino S, Wang M. Weighting estimation in the cause-specific Cox regression with partially missing causes of failure. Statistics in medicine. 2024. doi:10.1002/sim.10084

Potential Influence of Risk Factor Control on the Association Between Lipoprotein(a) and Atherosclerotic Cardiovascular Disease.

Ghouse J, Ahlberg G, Rand SA, et al. Potential Influence of Risk Factor Control on the Association Between Lipoprotein(a) and Atherosclerotic Cardiovascular Disease. Arteriosclerosis, thrombosis, and vascular biology. 2024. doi:10.1161/ATVBAHA.124.320990

Prenatal opioid exposure and subsequent risk of neuropsychiatric disorders in children: nationwide birth cohort study in South Korea.

Kang J, Kim HJ, Kim T, et al. Prenatal opioid exposure and subsequent risk of neuropsychiatric disorders in children: nationwide birth cohort study in South Korea. BMJ (Clinical research ed.). 2024;385:e077664. doi:10.1136/bmj-2023-077664

Author Correction: Adenine transversion editors enable precise, efficient A•T-to-C•G base editing in mammalian cells and embryos.

Chen L, Hong M, Luan C, et al. Author Correction: Adenine transversion editors enable precise, efficient A•T-to-C•G base editing in mammalian cells and embryos. Nature biotechnology. 2024. doi:10.1038/s41587-024-02253-9

Single-cell analysis reveals context-dependent, cell-level selection of mtDNA.

Kotrys A V, Durham TJ, Guo XA, Vantaku VR, Parangi S, Mootha VK. Single-cell analysis reveals context-dependent, cell-level selection of mtDNA. Nature. 2024. doi:10.1038/s41586-024-07332-0

Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification.

Ryu J, Barkal S, Yu T, et al. Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification. Nature genetics. 2024. doi:10.1038/s41588-024-01726-6

Microbiome signatures associated with clinical stages of gastric Cancer: whole metagenome shotgun sequencing study.

Jeong S, Liao YT, Tsai MH, et al. Microbiome signatures associated with clinical stages of gastric Cancer: whole metagenome shotgun sequencing study. BMC microbiology. 2024;24(1):139. doi:10.1186/s12866-024-03219-2

Autonomous circadian rhythms in the human hepatocyte regulate hepatic drug metabolism and inflammatory responses.

March S, Nerurkar N, Jain A, et al. Autonomous circadian rhythms in the human hepatocyte regulate hepatic drug metabolism and inflammatory responses. Science advances. 2024;10(17):eadm9281. doi:10.1126/sciadv.adm9281

Integrative spatial analysis reveals a multi-layered organization of glioblastoma.

Greenwald AC, Darnell NG, Hoefflin R, et al. Integrative spatial analysis reveals a multi-layered organization of glioblastoma. Cell. 2024. doi:10.1016/j.cell.2024.03.029