Publications

Multicolor Long-Term Single-Particle Tracking Using 10 nm Upconverting Nanoparticles.

Shida JF, Ma K, Toll HW, Salinas O, Ma X, Peng CS. Multicolor Long-Term Single-Particle Tracking Using 10 nm Upconverting Nanoparticles. Nano letters. 2024. doi:10.1021/acs.nanolett.4c00207

Thrombosis Risk in Double Heterozygous Carriers of Factor V Leiden and Prothrombin G20210A in FinnGen and the UK Biobank.

Ryu J, Rämö JT, Jurgens SJ, et al. Thrombosis Risk in Double Heterozygous Carriers of Factor V Leiden and Prothrombin G20210A in FinnGen and the UK Biobank. Blood. 2024. doi:10.1182/blood.2023023326

Plasma metabolite profile of legume consumption and future risk of type 2 diabetes and cardiovascular disease.

Margara-Escudero HJ, Paz-Graniel I, García-Gavilán J, et al. Plasma metabolite profile of legume consumption and future risk of type 2 diabetes and cardiovascular disease. Cardiovascular diabetology. 2024;23(1):38. doi:10.1186/s12933-023-02111-z

Effect of 1-year lifestyle intervention with energy-reduced Mediterranean diet and physical activity promotion on the gut metabolome and microbiota: a randomized clinical trial.

García-Gavilán JF, Atzeni A, Babio N, et al. Effect of 1-year lifestyle intervention with energy-reduced Mediterranean diet and physical activity promotion on the gut metabolome and microbiota: a randomized clinical trial. The American journal of clinical nutrition. 2024. doi:10.1016/j.ajcnut.2024.02.021

Multidisciplinary approach combining food metabolomics and epidemiology identifies meglutol as an important bioactive metabolite in tempe, an Indonesian fermented food.

Iman MN, Haslam DE, Liang L, et al. Multidisciplinary approach combining food metabolomics and epidemiology identifies meglutol as an important bioactive metabolite in tempe, an Indonesian fermented food. Food chemistry. 2024;446:138744. doi:10.1016/j.foodchem.2024.138744

Distinct transcriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection.

Young MG, Straub TJ, Worby CJ, et al. Distinct transcriptional profiles in the guts of recurrent UTI sufferers revealed by pan-genome hybrid selection. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.29.582780

CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution.

Qin Q, Popic V, Yu H, et al. CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.24.581862

PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets.

Zhang Z, Shen W, Liu Q, Zitnik M. PocketGen: Generating Full-Atom Ligand-Binding Protein Pockets. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.25.581968

Continuous-Time and Dynamic Suicide Attempt Risk Prediction with Neural Ordinary Differential Equations.

Sheu YH, Simm J, Wang B, Lee H, Smoller JW. Continuous-Time and Dynamic Suicide Attempt Risk Prediction with Neural Ordinary Differential Equations. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.02.25.24303343

Evaluating generalizability of artificial intelligence models for molecular datasets.

Ektefaie Y, Shen A, Bykova D, Marin M, Zitnik M, Farhat M. Evaluating generalizability of artificial intelligence models for molecular datasets. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.02.25.581982

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Publications

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