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Publications

Characteristics of objectively-measured naturalistic light exposure patterns in U.S. adults: A cross-sectional analysis of two cohorts.

Wallace DA, Evenson KR, Isasi CR, et al. Characteristics of objectively-measured naturalistic light exposure patterns in U.S. adults: A cross-sectional analysis of two cohorts. The Science of the total environment. 2025;969:178839. doi:10.1016/j.scitotenv.2025.178839

Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1.

Oliver TRW, Lawson ARJ, Lee-Six H, et al. Cancer-independent somatic mutation of the wild-type NF1 allele in normal tissues in neurofibromatosis type 1. Nature genetics. 2025. doi:10.1038/s41588-025-02097-2

Detecting somatic mutations in single-cell data with SComatic.

Coorens THH. Detecting somatic mutations in single-cell data with SComatic. Nature reviews. Cancer. 2025. doi:10.1038/s41568-025-00799-7

Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns.

Millard N, Chen JH, Palshikar MG, et al. Batch correcting single-cell spatial transcriptomics count data with Crescendo improves visualization and detection of spatial gene patterns. Genome biology. 2025;26(1):36. doi:10.1186/s13059-025-03479-9

Relationships between the menstrual cycle and neuropsychiatric and physical symptoms in females with Tourette syndrome.

Noriega-Makarskyy DT, Realbuto E, Kaylor A, et al. Relationships between the menstrual cycle and neuropsychiatric and physical symptoms in females with Tourette syndrome. Frontiers in neurology. 2025;16:1500766. doi:10.3389/fneur.2025.1500766

Genome-Wide Association Study for Resting Electrocardiogram in the Qatari Population Identifies 6 Novel Genes and Validates Novel Polygenic Risk Scores.

Khan N, Shaar A, Kunji K, et al. Genome-Wide Association Study for Resting Electrocardiogram in the Qatari Population Identifies 6 Novel Genes and Validates Novel Polygenic Risk Scores. Journal of the American Heart Association. 2025:e038341. doi:10.1161/JAHA.124.038341

Chemical Synthesis, Refolding, and Characterization of Mirror-Image Cyclophilin A.

Yesilcimen A, Gandhesiri S, Travaline TL, et al. Chemical Synthesis, Refolding, and Characterization of Mirror-Image Cyclophilin A. The Journal of organic chemistry. 2025. doi:10.1021/acs.joc.4c03049

Building the first base editors.

Waterbury AL, Iram I, Liau BB. Building the first base editors. Nature chemical biology. 2025;21(1):16-17. doi:10.1038/s41589-024-01790-3

Analysis-ready VCF at Biobank scale using Zarr.

Czech E, Millar TR, Tyler W, et al. Analysis-ready VCF at Biobank scale using Zarr. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2024.06.11.598241

Phyla: Towards a foundation model for phylogenetic inference.

Shen A, Ektefaie Y, Jain L, Farhat M, Zitnik M. Phyla: Towards a foundation model for phylogenetic inference. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.01.17.633626