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Publications

Accurate diagnosis of pediatric brain cancers.

Bandopadhayay P, Mardis ER. Accurate diagnosis of pediatric brain cancers. Nature medicine. 2023;29(4):787-788. doi:10.1038/s41591-023-02254-2

Untangling the CD4 T cell response to the microbiota.

Mayassi T, Xavier RJ. Untangling the CD4 T cell response to the microbiota. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(16):e2303351120. doi:10.1073/pnas.2303351120

A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration.

Subramanian E, Elewa A, Brito G, et al. A small noncoding RNA links ribosome recovery and translation control to dedifferentiation during salamander limb regeneration. Developmental cell. 2023;58(6):450-460.e6. doi:10.1016/j.devcel.2023.02.007

Evaluating explainability for graph neural networks.

Agarwal C, Queen O, Lakkaraju H, Zitnik M. Evaluating explainability for graph neural networks. Scientific data. 2023;10(1):144. doi:10.1038/s41597-023-01974-x

DisP-seq reveals the genome-wide functional organization of DNA-associated disordered proteins.

Xing YH, Dong R, Lee L, et al. DisP-seq reveals the genome-wide functional organization of DNA-associated disordered proteins. Nature biotechnology. 2023. doi:10.1038/s41587-023-01737-4

Comparison of clinical manifestations in mpox patients living with HIV versus without HIV: a systematic review and meta-analysis.

Shin H, Shin H, Rahmati M, et al. Comparison of clinical manifestations in mpox patients living with HIV versus without HIV: a systematic review and meta-analysis. Journal of medical virology. 2023. doi:10.1002/jmv.28713

Label-free cell segmentation of diverse lymphoid tissues in 2D and 3D.

Wills JW, Robertson J, Tourlomousis P, et al. Label-free cell segmentation of diverse lymphoid tissues in 2D and 3D. Cell reports methods. 2023;3(2):100398. doi:10.1016/j.crmeth.2023.100398

The scverse project provides a computational ecosystem for single-cell omics data analysis.

Virshup I, Bredikhin D, Heumos L, et al. The scverse project provides a computational ecosystem for single-cell omics data analysis. Nature biotechnology. 2023. doi:10.1038/s41587-023-01733-8

Branched Multimeric Peptides as Affinity Reagents for the Detection of α-Klotho Protein.

Ye X, Zhang P, Wang JCK, et al. Branched Multimeric Peptides as Affinity Reagents for the Detection of α-Klotho Protein. Angewandte Chemie (International ed. in English). 2023;62(19):e202300289. doi:10.1002/anie.202300289

Target-driven machine learning-enabled virtual screening (TAME-VS) platform for early-stage hit identification.

Bian Y, Kwon JJ, Liu C, Margiotta E, Shekhar M, Gould AE. Target-driven machine learning-enabled virtual screening (TAME-VS) platform for early-stage hit identification. Frontiers in molecular biosciences. 2023;10:1163536. doi:10.3389/fmolb.2023.1163536