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Publications

Autofluorescence imaging permits label-free cell type assignment and reveals the dynamic formation of airway secretory cell associated antigen passages (SAPs).

Shah VS, Hou J, Vinarsky V, et al. Autofluorescence imaging permits label-free cell type assignment and reveals the dynamic formation of airway secretory cell associated antigen passages (SAPs). eLife. 2023;12. doi:10.7554/eLife.84375

Human T cell generation is restored in CD3δ severe combined immunodeficiency through adenine base editing.

McAuley GE, Yiu G, Chang PC, et al. Human T cell generation is restored in CD3δ severe combined immunodeficiency through adenine base editing. Cell. 2023;186(7):1398-1416.e23. doi:10.1016/j.cell.2023.02.027

Clonal Hematopoiesis in Older Patients with Breast Cancer Receiving Chemotherapy.

Mayerhofer C, Sedrak MS, Hopkins JO, et al. Clonal Hematopoiesis in Older Patients with Breast Cancer Receiving Chemotherapy. Journal of the National Cancer Institute. 2023. doi:10.1093/jnci/djad065

Wide and deep neural networks achieve consistency for classification.

Radhakrishnan A, Belkin M, Uhler C. Wide and deep neural networks achieve consistency for classification. Proceedings of the National Academy of Sciences of the United States of America. 2023;120(14):e2208779120. doi:10.1073/pnas.2208779120

A cryptic pathogenic NDUFV1 variant identified by RNA-seq in a patient with normal complex I activity in muscle and transient magnetic resonance imaging changes.

Kiss S, Christodoulou J, Thorburn DR, et al. A cryptic pathogenic NDUFV1 variant identified by RNA-seq in a patient with normal complex I activity in muscle and transient magnetic resonance imaging changes. American journal of medical genetics. Part A. 2023;191(6):1599-1606. doi:10.1002/ajmg.a.63170

HLA Class I Genotype Is Associated with Relapse Risk after Allogeneic Stem Cell Transplantation for NPM1-Mutated Acute Myeloid Leukemia.

Narayan R, Niroula A, Wang T, et al. HLA Class I Genotype Is Associated with Relapse Risk after Allogeneic Stem Cell Transplantation for NPM1-Mutated Acute Myeloid Leukemia. Transplantation and cellular therapy. 2023. doi:10.1016/j.jtct.2023.03.027

Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity.

Houck ML, Koepfli KP, Hains T, et al. Chromosome-length genome assemblies and cytogenomic analyses of pangolins reveal remarkable chromosome counts and plasticity. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology. 2023;31(2):13. doi:10.1007/s10577-023-09722-y

Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion.

Battistello E, Hixon KA, Comstock DE, et al. Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion. Molecular cell. 2023;83(8):1216-1236.e12. doi:10.1016/j.molcel.2023.02.026

RNAget: an API to securely retrieve RNA quantifications.

Upchurch S, Palumbo E, Adams J, et al. RNAget: an API to securely retrieve RNA quantifications. Bioinformatics (Oxford, England). 2023;39(4). doi:10.1093/bioinformatics/btad126

Clinical and genetic associations of deep learning-derived cardiac magnetic resonance-based left ventricular mass.

Khurshid S, Lazarte J, Pirruccello JP, et al. Clinical and genetic associations of deep learning-derived cardiac magnetic resonance-based left ventricular mass. Nature communications. 2023;14(1):1558. doi:10.1038/s41467-023-37173-w