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Epigenomics

Points of view: Data exploration.

Shoresh N, Wong B. Points of view: Data exploration. Nature methods. 2012;9(1):5.

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.

Brinkman A, Gu H, Bartels S, et al. Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk. Genome research. 2012;22(6):1128-38. doi:10.1101/gr.133728.111

Mapping and analysis of chromatin state dynamics in nine human cell types.

Ernst J, Kheradpour P, Mikkelsen T, et al. Mapping and analysis of chromatin state dynamics in nine human cell types. Nature. 2011;473(7345):43-9. doi:10.1038/nature09906

Comparative epigenomic analysis of murine and human adipogenesis.

Mikkelsen TS, Xu Z, Zhang X, et al. Comparative epigenomic analysis of murine and human adipogenesis. Cell. 2010;143(1):156-69. doi:10.1016/j.cell.2010.09.006

Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Meissner A, Mikkelsen TS, Gu H, et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature. 2008;454(7205):766-70. doi:10.1038/nature07107