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Publications

High-throughput proteomic and phosphoproteomic analysis of formalin-fixed paraffin-embedded tissue.

Haines M, Thorup JR, Gohsman S, et al. High-throughput proteomic and phosphoproteomic analysis of formalin-fixed paraffin-embedded tissue. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.11.17.624038

Central role of glycosylation processes in human genetic susceptibility to SARS-CoV-2 infections with Omicron variants.

Geller F, Wu X, Lammi V, et al. Central role of glycosylation processes in human genetic susceptibility to SARS-CoV-2 infections with Omicron variants. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.11.21.24317689

Blood methylation biomarkers are associated with diabetic kidney disease progression in type 1 diabetes.

Syreeni A, Dahlström EH, Smyth LJ, et al. Blood methylation biomarkers are associated with diabetic kidney disease progression in type 1 diabetes. medRxiv : the preprint server for health sciences. 2024. doi:10.1101/2024.11.28.24318055

Non-Generative Artificial Intelligence (AI) in Medicine: Advancements and Applications in Supervised and Unsupervised Machine Learning.

Pantanowitz L, Pearce T, Abukhiran I, et al. Non-Generative Artificial Intelligence (AI) in Medicine: Advancements and Applications in Supervised and Unsupervised Machine Learning. Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2024:100680. doi:10.1016/j.modpat.2024.100680

Analysis of variants induced by combined ex vivo irradiation and in vivo tumorigenesis suggests a role for the ZNF831 p.R1393Q mutation in cutaneous melanoma development.

Usoltsev D, Njauw CN, Ji Z, et al. Analysis of variants induced by combined ex vivo irradiation and in vivo tumorigenesis suggests a role for the ZNF831 p.R1393Q mutation in cutaneous melanoma development. The Journal of investigative dermatology. 2024. doi:10.1016/j.jid.2024.08.042

Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research.

Kapoor M, Ventura ES, Walsh A, et al. Building a FAIR data ecosystem for incorporating single-cell transcriptomics data into agricultural genome to phenome research. Frontiers in genetics. 2024;15:1460351. doi:10.3389/fgene.2024.1460351

Disrupted uromodulin trafficking is rescued by targeting TMED cargo receptors.

Bazua-Valenti S, Brown MR, Zavras J, et al. Disrupted uromodulin trafficking is rescued by targeting TMED cargo receptors. The Journal of clinical investigation. 2024;134(24). doi:10.1172/JCI180347

De novo variants disrupt an LDB1-regulated transcriptional network in congenital ventriculomegaly.

Allington G, Mehta NH, Dennis E, et al. De novo variants disrupt an LDB1-regulated transcriptional network in congenital ventriculomegaly. Brain : a journal of neurology. 2024. doi:10.1093/brain/awae395

DLBclass: A Probabilistic Molecular Classifier to Guide Clinical Investigation and Practice in DLBCL.

Chapuy B, Wood TR, Stewart C, et al. DLBclass: A Probabilistic Molecular Classifier to Guide Clinical Investigation and Practice in DLBCL. Blood. 2024. doi:10.1182/blood.2024025652

Associations between phenotypes of childhood and adolescent obesity and incident hypertension in young adulthood.

St Fleur RG, Tanofsky-Kraff M, Yanovski JA, et al. Associations between phenotypes of childhood and adolescent obesity and incident hypertension in young adulthood. International journal of obesity (2005). 2024. doi:10.1038/s41366-024-01700-6