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Publications

Concerted neuron-astrocyte gene expression declines in aging and schizophrenia.

Ling E, Nemesh J, Goldman M, et al. Concerted neuron-astrocyte gene expression declines in aging and schizophrenia. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.07.574148

FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA.

Liu Y, Reed SC, Lo C, et al. FinaleMe: Predicting DNA methylation by the fragmentation patterns of plasma cell-free DNA. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.02.573710

Machine Learning-based Classification of transcriptome Signatures of non-ulcerative Bladder Pain Syndrome.

Akshay A, Besic M, Kuhn A, et al. Machine Learning-based Classification of transcriptome Signatures of non-ulcerative Bladder Pain Syndrome. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.01.08.574189

Co-recovery of physical size and cognitive ability from infancy to adolescence: A twin study.

Womack SR, Beam CR, Giangrande EJ, et al. Co-recovery of physical size and cognitive ability from infancy to adolescence: A twin study. Child development. 2024. doi:10.1111/cdev.14079

Nuclear to cytoplasmic transport is a druggable dependency in MYC-driven hepatocellular carcinoma.

Deutzmann A, Sullivan DK, Dhanasekaran R, et al. Nuclear to cytoplasmic transport is a druggable dependency in MYC-driven hepatocellular carcinoma. Nature communications. 2024;15(1):963. doi:10.1038/s41467-024-45128-y

ASO Visual Abstract: Factors Affecting Recurrence and Survival in High-Risk Stage II Melanoma.

Dedeilia A, Lwin T, Li S, et al. ASO Visual Abstract: Factors Affecting Recurrence and Survival in High-Risk Stage II Melanoma. Annals of surgical oncology. 2024. doi:10.1245/s10434-023-14869-3

Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA Drug-Induced Cardiotoxicity Rank.

Seal S, Spjuth O, Hosseini-Gerami L, et al. Insights into Drug Cardiotoxicity from Biological and Chemical Data: The First Public Classifiers for FDA Drug-Induced Cardiotoxicity Rank. Journal of chemical information and modeling. 2024. doi:10.1021/acs.jcim.3c01834

Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders.

Orenbuch R, Kollasch AW, Spinner HD, et al. Deep generative modeling of the human proteome reveals over a hundred novel genes involved in rare genetic disorders. Research square. 2024. doi:10.21203/rs.3.rs-3740259/v1

Heterozygous loss-of-function SMC3 variants are associated with variable growth and developmental features.

Ansari M, Faour KNW, Shimamura A, et al. Heterozygous loss-of-function SMC3 variants are associated with variable growth and developmental features. HGG advances. 2024:100273. doi:10.1016/j.xhgg.2024.100273

GWAS for systemic sclerosis identifies six novel susceptibility loci including one in the Fcγ receptor region.

Ishikawa Y, Tanaka N, Asano Y, et al. GWAS for systemic sclerosis identifies six novel susceptibility loci including one in the Fcγ receptor region. Nature communications. 2024;15(1):319. doi:10.1038/s41467-023-44541-z