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Publications

Utility of long-read sequencing for All of Us.

Mahmoud M, Huang Y, Garimella K, et al. Utility of long-read sequencing for All of Us. Nature communications. 2024;15(1):837. doi:10.1038/s41467-024-44804-3

MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops.

Tang L, Liao J, Hill MC, et al. MMCT-Loop: a mix model-based pipeline for calling targeted 3D chromatin loops. Nucleic acids research. 2024. doi:10.1093/nar/gkae029

SHIFTR enables the unbiased identification of proteins bound to specific RNA regions in live cells.

Aydin J, Gabel A, Zielinski S, et al. SHIFTR enables the unbiased identification of proteins bound to specific RNA regions in live cells. Nucleic acids research. 2024. doi:10.1093/nar/gkae038

Editorial: Progress and Challenges in Characterizing Psychiatric Symptoms and Behaviors in Suicidal Preadolescent Children.

Liu RT. Editorial: Progress and Challenges in Characterizing Psychiatric Symptoms and Behaviors in Suicidal Preadolescent Children. Journal of the American Academy of Child and Adolescent Psychiatry. 2024. doi:10.1016/j.jaac.2024.01.004

Proteasome Inhibitors in Multiple Myeloma: Biological Insights on Mechanisms of Action or Resistance Informed by Functional Genomics.

Mitsiades CS. Proteasome Inhibitors in Multiple Myeloma: Biological Insights on Mechanisms of Action or Resistance Informed by Functional Genomics. Hematology/oncology clinics of North America. 2024. doi:10.1016/j.hoc.2023.12.016

Genetic architecture and biology of youth-onset type 2 diabetes.

Kwak SH, Srinivasan S, Chen L, et al. Genetic architecture and biology of youth-onset type 2 diabetes. Nature metabolism. 2024. doi:10.1038/s42255-023-00970-0

scPerturb: harmonized single-cell perturbation data.

Peidli S, Green TD, Shen C, et al. scPerturb: harmonized single-cell perturbation data. Nature methods. 2024. doi:10.1038/s41592-023-02144-y

Enhanced Directed Evolution in Mammalian Cells Yields a Hyperefficient Pyrrolysyl tRNA for Noncanonical Amino Acid Mutagenesis.

Jewel D, Kelemen RE, Huang RL, et al. Enhanced Directed Evolution in Mammalian Cells Yields a Hyperefficient Pyrrolysyl tRNA for Noncanonical Amino Acid Mutagenesis. Angewandte Chemie (International ed. in English). 2024:e202316428. doi:10.1002/anie.202316428

Utility of cortical tissue analysis in normal pressure hydrocephalus.

Greenberg ABW, Mekbib KY, Mehta NH, et al. Utility of cortical tissue analysis in normal pressure hydrocephalus. Cerebral cortex (New York, N.Y. : 1991). 2024. doi:10.1093/cercor/bhae001

CIC-DUX4 Chromatin Profiling Reveals New Epigenetic Dependencies and Actionable Therapeutic Targets in CIC-Rearranged Sarcomas.

Bakaric A, Cironi L, Praz V, et al. CIC-DUX4 Chromatin Profiling Reveals New Epigenetic Dependencies and Actionable Therapeutic Targets in CIC-Rearranged Sarcomas. Cancers. 2024;16(2). doi:10.3390/cancers16020457