Publications

Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis.

Akshay A, Katoch M, Shekarchizadeh N, et al. Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.07.04.546825

The Cardiovascular Impact and Genetics of Pericardial Adiposity.

Rämö JT, Kany S, Hou CR, et al. The Cardiovascular Impact and Genetics of Pericardial Adiposity. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.07.16.23292729

The T cell receptor sequence influences the likelihood of T cell memory formation.

Lagattuta KA, Nathan A, Rumker L, Birnbaum ME, Raychaudhuri S. The T cell receptor sequence influences the likelihood of T cell memory formation. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.07.20.549939

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians.

Suliman S, Nieto-Caballero VE, Asgari S, et al. History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.20.23291558

Contextualizing protein representations using deep learning on protein networks and single-cell data.

Li MM, Huang Y, Sumathipala M, et al. Contextualizing protein representations using deep learning on protein networks and single-cell data. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.07.18.549602

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and sequencing.

Zhang A, Jin L, Yao S, et al. Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and sequencing. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.03.16.532873

Understanding the genetic complexity of puberty timing across the allele frequency spectrum.

Kentistou KA, Kaisinger LR, Stankovic S, et al. Understanding the genetic complexity of puberty timing across the allele frequency spectrum. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.14.23291322

Fine-mapping across diverse ancestries drives the discovery of putative causal variants underlying human complex traits and diseases.

Yuan K, Longchamps RJ, Pardiñas AF, et al. Fine-mapping across diverse ancestries drives the discovery of putative causal variants underlying human complex traits and diseases. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.01.07.23284293

Integrative metabolomics differentiate coronary artery disease, peripheral artery disease, and venous thromboembolism risks.

Lee J, Gilliland T, Koyama S, et al. Integrative metabolomics differentiate coronary artery disease, peripheral artery disease, and venous thromboembolism risks. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.21.23291103

Aging impairs cold-induced beige adipogenesis and adipocyte metabolic reprogramming.

Holman CD, Sakers AP, Calhoun RP, et al. Aging impairs cold-induced beige adipogenesis and adipocyte metabolic reprogramming. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.03.20.533514