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Publications

Machine learning-based clustering identifies obesity subgroups with differential multi-omics profiles and metabolic patterns.

Anwar MY, Highland H, Buchanan VL, et al. Machine learning-based clustering identifies obesity subgroups with differential multi-omics profiles and metabolic patterns. Obesity (Silver Spring, Md.). 2024;32(11):2024-2034. doi:10.1002/oby.24137

Machine learning-based clustering identifies obesity subgroups with differential multi-omics profiles and metabolic patterns.

Anwar MY, Highland H, Buchanan VL, et al. Machine learning-based clustering identifies obesity subgroups with differential multi-omics profiles and metabolic patterns. Obesity (Silver Spring, Md.). 2024;32(11):2024-2034. doi:10.1002/oby.24137

Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection.

Young MG, Straub TJ, Worby CJ, et al. Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection. Nature communications. 2024;15(1):9466. doi:10.1038/s41467-024-53829-7

HiDDEN: a machine learning method for detection of disease-relevant populations in case-control single-cell transcriptomics data.

Goeva A, Dolan MJ, Luu J, et al. HiDDEN: a machine learning method for detection of disease-relevant populations in case-control single-cell transcriptomics data. Nature communications. 2024;15(1):9468. doi:10.1038/s41467-024-53666-8

Clinical and Genomic Features of Classical and Basal Transcriptional Subtypes in Pancreatic Cancer.

Singh H, Xiu J, Kapner KS, et al. Clinical and Genomic Features of Classical and Basal Transcriptional Subtypes in Pancreatic Cancer. Clinical cancer research : an official journal of the American Association for Cancer Research. 2024;30(21):4932-4942. doi:10.1158/1078-0432.CCR-24-1164

Dynamic evolution of fibroblasts revealed by single cell RNA sequencing of human pancreatic cancer.

Dimitrieva S, Harrison JM, Chang J, et al. Dynamic evolution of fibroblasts revealed by single cell RNA sequencing of human pancreatic cancer. Cancer research communications. 2024. doi:10.1158/2767-9764.CRC-23-0489

Perturbation-specific transcriptional mapping for unbiased target elucidation of antibiotics.

Romano KP, Bagnall J, Warrier T, et al. Perturbation-specific transcriptional mapping for unbiased target elucidation of antibiotics. Proceedings of the National Academy of Sciences of the United States of America. 2024;121(45):e2409747121. doi:10.1073/pnas.2409747121

Cytopenias in BCMA CAR T: unraveling inflammatory mechanisms.

Sperling AS. Cytopenias in BCMA CAR T: unraveling inflammatory mechanisms. Blood advances. 2024;8(21):5527-5528. doi:10.1182/bloodadvances.2024014308

Cytopenias in BCMA CAR T: unraveling inflammatory mechanisms.

Sperling AS. Cytopenias in BCMA CAR T: unraveling inflammatory mechanisms. Blood advances. 2024;8(21):5527-5528. doi:10.1182/bloodadvances.2024014308

Electroencephalographic Microstates During Sleep and Wake in Schizophrenia.

Murphy M, Jiang C, Wang LA, et al. Electroencephalographic Microstates During Sleep and Wake in Schizophrenia. Biological psychiatry global open science. 2024;4(6):100371. doi:10.1016/j.bpsgos.2024.100371