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Publications

Targeting conditioned media dependencies and FLT-3 in chronic lymphocytic leukemia.

Parvin S, Aryal A, Yin S, et al. Targeting conditioned media dependencies and FLT-3 in chronic lymphocytic leukemia. Blood advances. 2023;7(19):5877-5889. doi:10.1182/bloodadvances.2022008207

Hyper-Dependence on NHEJ Enables Synergy Between DNA-PK Inhibitors and Low-Dose Doxorubicin in Leiomyosarcoma.

Marino-Enriquez A, Novotny JP, Gulhan DC, et al. Hyper-Dependence on NHEJ Enables Synergy Between DNA-PK Inhibitors and Low-Dose Doxorubicin in Leiomyosarcoma. Clinical cancer research : an official journal of the American Association for Cancer Research. 2023. doi:10.1158/1078-0432.CCR-23-0998

Bridging Imaging Users to Imaging Analysis - A community survey.

Sivagurunathan S, Marcotti S, Nelson CJ, et al. Bridging Imaging Users to Imaging Analysis - A community survey. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.05.543701

Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease.

Hou L, Xiong X, Park Y, et al. Multitissue H3K27ac profiling of GTEx samples links epigenomic variation to disease. Nature genetics. 2023. doi:10.1038/s41588-023-01509-5

An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells.

Sahay S, Adhikari S, Hormoz S, Chakrabarti S. An improved rhythmicity analysis method using Gaussian Processes detects cell-density dependent circadian oscillations in stem cells. Bioinformatics (Oxford, England). 2023. doi:10.1093/bioinformatics/btad602

Distinct HLA associations with autoantibody-defined subgroups in idiopathic inflammatory myopathies.

Leclair V, Galindo-Feria AS, Rothwell S, et al. Distinct HLA associations with autoantibody-defined subgroups in idiopathic inflammatory myopathies. EBioMedicine. 2023;96:104804. doi:10.1016/j.ebiom.2023.104804

CIRCUST: A novel methodology for temporal order reconstruction of molecular rhythms; validation and application towards a daily rhythm gene expression atlas in humans.

Larriba Y, Mason IC, Saxena R, Scheer FAJL, Rueda C. CIRCUST: A novel methodology for temporal order reconstruction of molecular rhythms; validation and application towards a daily rhythm gene expression atlas in humans. PLoS computational biology. 2023;19(9):e1011510. doi:10.1371/journal.pcbi.1011510

Chemical Specification of E3 Ubiquitin Ligase Engagement by Cysteine-Reactive Chemistry.

Sarott RC, You I, Der Li Y, et al. Chemical Specification of E3 Ubiquitin Ligase Engagement by Cysteine-Reactive Chemistry. Journal of the American Chemical Society. 2023. doi:10.1021/jacs.3c06622

HLA signatures as pathophysiological discriminants of microscopic colitis subtypes.

Zheng T, Roda G, Zabana Y, et al. HLA signatures as pathophysiological discriminants of microscopic colitis subtypes. Journal of Crohn’s & colitis. 2023. doi:10.1093/ecco-jcc/jjad165

Bayesian multivariate genetic analysis improves translational insights.

Urbut SM, Koyama S, Hornsby W, et al. Bayesian multivariate genetic analysis improves translational insights. iScience. 2023;26(10):107854. doi:10.1016/j.isci.2023.107854