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Publications

Type 2 inflammation drives an airway basal stem cell program through insulin receptor substrate signaling.

Wang X, Hallen NR, Lee M, et al. Type 2 inflammation drives an airway basal stem cell program through insulin receptor substrate signaling. The Journal of allergy and clinical immunology. 2023. doi:10.1016/j.jaci.2023.01.030

Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.

Yorki S, Shea T, Cuomo CA, et al. Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes. Briefings in bioinformatics. 2023;24(2). doi:10.1093/bib/bbad050

Fitm2 is required for ER homeostasis and normal function of murine liver.

Bond LM, Ibrahim A, Lai ZW, et al. Fitm2 is required for ER homeostasis and normal function of murine liver. The Journal of biological chemistry. 2023;299(3):103022. doi:10.1016/j.jbc.2023.103022

Multimodal representation learning for predicting molecule-disease relations.

Wen J, Zhang X, Rush E, et al. Multimodal representation learning for predicting molecule-disease relations. Bioinformatics (Oxford, England). 2023;39(2). doi:10.1093/bioinformatics/btad085

Multivariate genomic architecture of cortical thickness and surface area at multiple levels of analysis.

Grotzinger AD, Mallard TT, Liu Z, Seidlitz J, Ge T, Smoller JW. Multivariate genomic architecture of cortical thickness and surface area at multiple levels of analysis. Nature communications. 2023;14(1):946. doi:10.1038/s41467-023-36605-x

Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames.

Sandmann CL, Schulz JF, Ruiz-Orera J, et al. Evolutionary origins and interactomes of human, young microproteins and small peptides translated from short open reading frames. Molecular cell. 2023;83(6):994-1011.e18. doi:10.1016/j.molcel.2023.01.023

Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury.

Benhar I, Ding J, Yan W, et al. Temporal single-cell atlas of non-neuronal retinal cells reveals dynamic, coordinated multicellular responses to central nervous system injury. Nature immunology. 2023;24(4):700-713. doi:10.1038/s41590-023-01437-w

A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly.

Tolman ER, Beatty CD, Bush J, et al. A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly. Genome biology and evolution. 2023;15(3). doi:10.1093/gbe/evad024

Circadian Rest-Activity Rhythms, Delirium Risk, and Progression to Dementia.

Gao L, Li P, Gaykova N, et al. Circadian Rest-Activity Rhythms, Delirium Risk, and Progression to Dementia. Annals of neurology. 2023. doi:10.1002/ana.26617

Addressing Tumor Heterogeneity by Sensitizing Resistant Cancer Cells to T cell-secreted Cytokines.

Ito Y, Pan D, Zhang W, et al. Addressing Tumor Heterogeneity by Sensitizing Resistant Cancer Cells to T cell-secreted Cytokines. Cancer discovery. 2023. doi:10.1158/2159-8290.CD-22-1125