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Publications

Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex.

Uzquiano A, Kedaigle AJ, Pigoni M, et al. Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex. Cell. 2022;185(20):3770-3788.e27. doi:10.1016/j.cell.2022.09.010

Optogenetic polymerization and assembly of electrically functional polymers for modulation of single-neuron excitability.

Sessler C, Zhou Y, Wang W, et al. Optogenetic polymerization and assembly of electrically functional polymers for modulation of single-neuron excitability. Science advances. 2022;8(49):eade1136. doi:10.1126/sciadv.ade1136

MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.

Schapiro D, Sokolov A, Yapp C, et al. MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging. Nature methods. 2022;19(3):311-315. doi:10.1038/s41592-021-01308-y

MITI minimum information guidelines for highly multiplexed tissue images.

Schapiro D, Yapp C, Sokolov A, et al. MITI minimum information guidelines for highly multiplexed tissue images. Nature methods. 2022;19(3):262-267. doi:10.1038/s41592-022-01415-4

CRISPR-based therapeutics: current challenges and future applications.

Modell AE, Lim D, Nguyen TM, Sreekanth V, Choudhary A. CRISPR-based therapeutics: current challenges and future applications. Trends in pharmacological sciences. 2022;43(2):151-161. doi:10.1016/j.tips.2021.10.012

ABE8e adenine base editor precisely and efficiently corrects a recurrent COL7A1 nonsense mutation.

Sheriff A, Guri I, Zebrowska P, et al. ABE8e adenine base editor precisely and efficiently corrects a recurrent COL7A1 nonsense mutation. Scientific reports. 2022;12(1):19643. doi:10.1038/s41598-022-24184-8

Synthetic Reprogramming of Kinases Expands Cellular Activities of Proteins.

Shoba VM, Godage DNPM, Chaudhary SK, Deb A, Siriwardena SU, Choudhary A. Synthetic Reprogramming of Kinases Expands Cellular Activities of Proteins. Angewandte Chemie (International ed. in English). 2022;61(29):e202202770. doi:10.1002/anie.202202770

SpheroScan: a user-friendly deep learning tool for spheroid image analysis.

Akshay A, Katoch M, Abedi M, et al. SpheroScan: a user-friendly deep learning tool for spheroid image analysis. GigaScience. 2022;12. doi:10.1093/gigascience/giad082

Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.

Cosma BM, Zade RSH, Jordan EN, et al. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations. GigaScience. 2022;12. doi:10.1093/gigascience/giad100

MLcps: machine learning cumulative performance score for classification problems.

Akshay A, Abedi M, Shekarchizadeh N, et al. MLcps: machine learning cumulative performance score for classification problems. GigaScience. 2022;12. doi:10.1093/gigascience/giad108