Publications

The circadian clock regulates scavenging of fluid-borne substrates by brain border-associated macrophages.

Barr HJ, Caldwell SK, Reimertz JM, et al. The circadian clock regulates scavenging of fluid-borne substrates by brain border-associated macrophages. bioRxiv : the preprint server for biology. 2025. doi:10.64898/2025.12.08.693074

PMCID

PMC12713129

Efagins evolved independently to target the enterococcal cell wall.

Prichula J, Manson AL, Smith JT, et al. Efagins evolved independently to target the enterococcal cell wall. bioRxiv : the preprint server for biology. 2025. doi:10.64898/2025.12.13.693970

PMCID

PMC12713668

VIP-OT: Dissecting Single-Cell Biochemical State Dynamics under Perturbation via Vibrational Painting and Optimal Transport.

Li X, Stark SG, Liu X, et al. VIP-OT: Dissecting Single-Cell Biochemical State Dynamics under Perturbation via Vibrational Painting and Optimal Transport. bioRxiv : the preprint server for biology. 2025. doi:10.64898/2025.12.09.693255

PMCID

PMC12713145

Special Issue: Celebrating the Career of Donald F. Hunt.

Shabanowitz J, Abelin JG. Special Issue: Celebrating the Career of Donald F. Hunt. Molecular & cellular proteomics : MCP. 2025;25(1):101468. doi:10.1016/j.mcpro.2025.101468

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions.

Van Buren E, Zhang Y, Li X, et al. cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions. Nature methods. 2025. doi:10.1038/s41592-025-02919-5

Pertpy: an end-to-end framework for perturbation analysis.

Heumos L, Ji Y, May L, et al. Pertpy: an end-to-end framework for perturbation analysis. Nature methods. 2025. doi:10.1038/s41592-025-02909-7

Tracing social mechanisms and interregional connections in Early Bronze Age Societies in Lower Austria.

Furtwängler A, Rebay-Salisbury K, Neumann GU, et al. Tracing social mechanisms and interregional connections in Early Bronze Age Societies in Lower Austria. Nature communications. 2025. doi:10.1038/s41467-025-67906-y

Single-cell analysis of B cell dysregulation in pediatric sepsis stratified by disease severity.

Alhamdan F, Gianoli S, Yuki K, Koutsogiannaki S. Single-cell analysis of B cell dysregulation in pediatric sepsis stratified by disease severity. Scientific reports. 2025. doi:10.1038/s41598-025-34126-9

Affinity maturation and light-chain-mediated paratope diversification anticipates viral evolution.

Dingus J, Yoo DK, Kumar S, et al. Affinity maturation and light-chain-mediated paratope diversification anticipates viral evolution. Cell reports. 2025;45(1):116800. doi:10.1016/j.celrep.2025.116800

A shared DNA-repeat toxicity threshold, reached somatically at cell-type-specific rates, unites cortical and striatal neurodegeneration in Huntington's disease.

Kashin S, Lee WS, McDonald TM, et al. A shared DNA-repeat toxicity threshold, reached somatically at cell-type-specific rates, unites cortical and striatal neurodegeneration in Huntington’s disease. bioRxiv : the preprint server for biology. 2025. doi:10.64898/2025.12.09.688862

PMCID

PMC12713137

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Publications

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