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Publications

Rapid synthesis of glycosylated insulins by flow-based peptide synthesis.

Maki Y, Mong SK, Chandrashekar C, et al. Rapid synthesis of glycosylated insulins by flow-based peptide synthesis. Chemical science. 2025. doi:10.1039/d5sc01670c

Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis.

Reich M, Tabor T, Liefeld T, et al. Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis. Journal of bioinformatics and systems biology : Open access. 2025;8(1):1-7. doi:10.26502/jbsb.5107096

Alterations in DNA Methylation, Proteomic, and Metabolomic Profiles in African Ancestry Populations with APOL1 Risk Alleles.

Zhang X, Scadden AW, Marthi A, et al. Alterations in DNA Methylation, Proteomic, and Metabolomic Profiles in African Ancestry Populations with APOL1 Risk Alleles. Journal of the American Society of Nephrology : JASN. 2025. doi:10.1681/ASN.0000000688

Explainable modeling of single-cell perturbation data using attention and sparse dictionary learning.

Xu Y, Fleming S, Tegtmeyer M, McCarroll SA, Babadi M. Explainable modeling of single-cell perturbation data using attention and sparse dictionary learning. Cell systems. 2025:101245. doi:10.1016/j.cels.2025.101245

Explainable modeling of single-cell perturbation data using attention and sparse dictionary learning.

Xu Y, Fleming S, Tegtmeyer M, McCarroll SA, Babadi M. Explainable modeling of single-cell perturbation data using attention and sparse dictionary learning. Cell systems. 2025:101245. doi:10.1016/j.cels.2025.101245

A short and sickly life. Multi-indicator analysis of an infant from a late antique Italian burial site (Piano della Civita, Artena, 3rd-5th cent CE).

Cecconi V, Nava A, Lugli F, et al. A short and sickly life. Multi-indicator analysis of an infant from a late antique Italian burial site (Piano della Civita, Artena, 3rd-5th cent CE). International journal of paleopathology. 2025;49:93-103. doi:10.1016/j.ijpp.2025.03.004

Variant-to-function approaches for adipose tissue: Insights into cardiometabolic disorders.

Metz S, Belanich JR, Claussnitzer M, Kilpeläinen TO. Variant-to-function approaches for adipose tissue: Insights into cardiometabolic disorders. Cell genomics. 2025:100844. doi:10.1016/j.xgen.2025.100844

K-mer analysis of long-read alignment pileups for structural variant genotyping.

English AC, Cunial F, Metcalf GA, Gibbs RA, Sedlazeck FJ. K-mer analysis of long-read alignment pileups for structural variant genotyping. Nature communications. 2025;16(1):3218. doi:10.1038/s41467-025-58577-w

Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare.

Kämpe A, Gudmundsson S, Walsh CP, et al. Precision Omics Initiative Sweden (PROMISE) will integrate research with healthcare. Nature medicine. 2025. doi:10.1038/s41591-025-03631-9

Convergent and clonotype-enriched mutations in the light chain drive affinity maturation of a public antibody.

Rao V, Sapse I, Cohn H, et al. Convergent and clonotype-enriched mutations in the light chain drive affinity maturation of a public antibody. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.03.07.642041