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Publications

A benchmarking crisis in biomedical machine learning.

Mahmood F. A benchmarking crisis in biomedical machine learning. Nature medicine. 2025. doi:10.1038/s41591-025-03637-3

Environmental Protective and Risk Factors for Gastric Cancer: An Umbrella Review and Reanalysis of Meta-Analyses.

Kim S, Kim MS, Kwon Y, et al. Environmental Protective and Risk Factors for Gastric Cancer: An Umbrella Review and Reanalysis of Meta-Analyses. Journal of gastric cancer. 2025;25(2):285-302. doi:10.5230/jgc.2025.25.e16

Transfusion Risk in Open, Laparoscopic, and Robotic-Assisted Surgery: A Propensity Score Matched Case-Control Study across Surgical Disciplines.

Rumpf F, Choorapoikayil S, Hof L, et al. Transfusion Risk in Open, Laparoscopic, and Robotic-Assisted Surgery: A Propensity Score Matched Case-Control Study across Surgical Disciplines. Transfusion medicine and hemotherapy : offizielles Organ der Deutschen Gesellschaft fur Transfusionsmedizin und Immunhamatologie. 2025;52(2):142-151. doi:10.1159/000540981

Clonal Hematopoiesis of Indeterminate Potential and Progression of CKD.

Vlasschaert C, Pan Y, Chen J, et al. Clonal Hematopoiesis of Indeterminate Potential and Progression of CKD. Journal of the American Society of Nephrology : JASN. 2025. doi:10.1681/ASN.0000000680

Association of Clonal Hematopoiesis of Indeterminate Potential with Cardiovascular Events in Patients with CKD.

Pan Y, Vlasschaert C, Rao V, et al. Association of Clonal Hematopoiesis of Indeterminate Potential with Cardiovascular Events in Patients with CKD. Journal of the American Society of Nephrology : JASN. 2025. doi:10.1681/ASN.0000000671

Protocol for obtaining cancer type and subtype predictions using subSCOPE.

Grewal JK, Robertson G, Ellrott K, et al. Protocol for obtaining cancer type and subtype predictions using subSCOPE. STAR protocols. 2025;6(2):103705. doi:10.1016/j.xpro.2025.103705

Common-variant and rare-variant genetic architecture of heart failure across the allele-frequency spectrum.

Lee DSM, Cardone KM, Zhang DY, et al. Common-variant and rare-variant genetic architecture of heart failure across the allele-frequency spectrum. Nature genetics. 2025. doi:10.1038/s41588-025-02140-2

Transfer learning improves performance in volumetric electron microscopy organelle segmentation across tissues.

Xie R, Mulcahy B, Darbandi A, et al. Transfer learning improves performance in volumetric electron microscopy organelle segmentation across tissues. Bioinformatics advances. 2025;5(1):vbaf021. doi:10.1093/bioadv/vbaf021

Molecular basis for shifted receptor recognition by an encephalitic arbovirus.

Fan X, Li W, Oros J, et al. Molecular basis for shifted receptor recognition by an encephalitic arbovirus. Cell. 2025. doi:10.1016/j.cell.2025.03.029

Optimized toolkit for the manipulation of immortalized axolotl fibroblasts.

Tajer BJ, Kalu G, Jay S, et al. Optimized toolkit for the manipulation of immortalized axolotl fibroblasts. Methods (San Diego, Calif.). 2025. doi:10.1016/j.ymeth.2025.03.019