Publications

Dendrite cross attention for high-dose-rate brachytherapy distribution planning.

Saini S, Liu X. Dendrite cross attention for high-dose-rate brachytherapy distribution planning. Computers in biology and medicine. 2025;196(Pt C):110902. doi:10.1016/j.compbiomed.2025.110902

Protocol for mapping 2'-O-methylation using nanopore direct RNA-seq data with NanoNm.

Li Y, Chen J, Wang Y, et al. Protocol for mapping 2’-O-methylation using nanopore direct RNA-seq data with NanoNm. STAR protocols. 2025;6(3):104003. doi:10.1016/j.xpro.2025.104003

Ontology accelerates few-shot learning capability of large language model: A study in extraction of drug efficacy in a rare pediatric epilepsy.

Golnari P, Prantzalos K, Hood V, et al. Ontology accelerates few-shot learning capability of large language model: A study in extraction of drug efficacy in a rare pediatric epilepsy. International journal of medical informatics. 2025;201:105942. doi:10.1016/j.ijmedinf.2025.105942

Hereditary Spastic Paraplegia in Alberta: Lessons from a Well-Defined Cohort Including the Indigenous Population.

Assaedi E, Ashtiani S, Estiar MA, et al. Hereditary Spastic Paraplegia in Alberta: Lessons from a Well-Defined Cohort Including the Indigenous Population. Movement disorders clinical practice. 2025;12(9):1346-1356. doi:10.1002/mdc3.70115

Generation of a Biliary Tract Cancer Cell Line Atlas Identifies Molecular Subtypes and Therapeutic Targets.

Vijay V, Karisani N, Shi L, et al. Generation of a Biliary Tract Cancer Cell Line Atlas Identifies Molecular Subtypes and Therapeutic Targets. Cancer discovery. 2025;15(9):1858-1882. doi:10.1158/2159-8290.CD-24-1383

Associations between Calcium Intake and T-cell Infiltration in Colorectal Tumors.

Wesselink E, Thomas CE, Takashima Y, et al. Associations between Calcium Intake and T-cell Infiltration in Colorectal Tumors. Cancer prevention research (Philadelphia, Pa.). 2025;18(9):561-571. doi:10.1158/1940-6207.CAPR-25-0023

Early immune evasion in colorectal cancer: interplay between stem cells and the tumor microenvironment.

Goto N, Agudo J, Yilmaz ÖH. Early immune evasion in colorectal cancer: interplay between stem cells and the tumor microenvironment. Trends in cancer. 2025;11(9):850-861. doi:10.1016/j.trecan.2025.04.016

Pre-treatment untargeted cerebrospinal fluid metabolomic profiling in tuberculous meningitis uncovers pathways associated with mortality.

Le THN, van Abeelen KCJ, Ardiansyah E, et al. Pre-treatment untargeted cerebrospinal fluid metabolomic profiling in tuberculous meningitis uncovers pathways associated with mortality. Med (New York, N.Y.). 2025;6(9):100703. doi:10.1016/j.medj.2025.100703

Pre-treatment untargeted cerebrospinal fluid metabolomic profiling in tuberculous meningitis uncovers pathways associated with mortality.

Le THN, van Abeelen KCJ, Ardiansyah E, et al. Pre-treatment untargeted cerebrospinal fluid metabolomic profiling in tuberculous meningitis uncovers pathways associated with mortality. Med (New York, N.Y.). 2025;6(9):100703. doi:10.1016/j.medj.2025.100703

Estimating the Effects of Lifestyle Interventions on Mortality Among Cancer Survivors: A Methodologic Framework.

McGee EE, Hernán MA, Giovannucci E, et al. Estimating the Effects of Lifestyle Interventions on Mortality Among Cancer Survivors: A Methodologic Framework. Epidemiology (Cambridge, Mass.). 2025;36(5):705-718. doi:10.1097/EDE.0000000000001889

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Publications

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