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Publications

Toward AI-Powered Cancer Etiology Research.

Ji M, Zhang L, Zitnik M, Hripcsak G, Buenrostro JD, Cao Y. Toward AI-Powered Cancer Etiology Research. Cancer discovery. 2026:OF1-OF6. doi:10.1158/2159-8290.CD-25-2098

Tailored Exercise Strategies and Mortality Among Breast Cancer Survivors.

Jayasekera J, Ergas IJ, Schneider J, et al. Tailored Exercise Strategies and Mortality Among Breast Cancer Survivors. JAMA network open. 2026;9(4):e265177. doi:10.1001/jamanetworkopen.2026.5177

Same-Slide Spatial Multi-Omics Integration with IN-DEPTH Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.

Yiu SPT, Chang Y, Yeo YY, et al. Same-Slide Spatial Multi-Omics Integration with IN-DEPTH Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment. Cancer discovery. 2026. doi:10.1158/2159-8290.CD-25-0775

Segmental copy number amplifications are more stable than aneuploidies in the absence of selection.

De T, Ben Nun N, Spealman P, et al. Segmental copy number amplifications are more stable than aneuploidies in the absence of selection. Molecular biology and evolution. 2026. doi:10.1093/molbev/msag095

Restoration of the immune system with base editing and non-genotoxic conditioning in a Rag2 point-mutant mouse model.

Dib C, Queenan JA, Willner H, et al. Restoration of the immune system with base editing and non-genotoxic conditioning in a Rag2 point-mutant mouse model. Molecular therapy : the journal of the American Society of Gene Therapy. 2026. doi:10.1016/j.ymthe.2026.04.010

Cryopreservation of stem cell-derived aggregates for type 1 diabetes cell therapy: Considerations and challenges.

Barsukova AD, Weng L, Szymanska-Vandendriessche K, Scott M, Langer R, Traverso G. Cryopreservation of stem cell-derived aggregates for type 1 diabetes cell therapy: Considerations and challenges. Journal of controlled release : official journal of the Controlled Release Society. 2026:114914. doi:10.1016/j.jconrel.2026.114914

Accelerometer-Measured Sedentary Behavior, Future Disease, and Cardiovascular-Kidney-Metabolic Health.

Ajufo E, Kany S, Rämö JT, et al. Accelerometer-Measured Sedentary Behavior, Future Disease, and Cardiovascular-Kidney-Metabolic Health. JACC. Advances. 2026;5(5):102718. doi:10.1016/j.jacadv.2026.102718

Interpretable deep generative ensemble learning for single-cell omics with Hydra.

Wagle MM, Liu C, Liu Z, et al. Interpretable deep generative ensemble learning for single-cell omics with Hydra. Molecular systems biology. 2026. doi:10.1038/s44320-026-00208-7

Experimental and computational methods for allelic imbalance analysis from single-nucleus RNA-seq data.

Simmons SK, Adiconis X, Haywood N, et al. Experimental and computational methods for allelic imbalance analysis from single-nucleus RNA-seq data. Genome biology. 2026. doi:10.1186/s13059-026-04062-6

Objective prediction of siesta based on machine learning and association with obesity.

Martín MR, Caballero FM, Dashti HS, et al. Objective prediction of siesta based on machine learning and association with obesity. Sleep health. 2026. doi:10.1016/j.sleh.2026.02.007