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Publications

A Tandem Repeat Atlas for the Genome of Inbred Mouse Strains: A Genetic Variation Resource.

Ren W, Liu W, Fang Z, et al. A Tandem Repeat Atlas for the Genome of Inbred Mouse Strains: A Genetic Variation Resource. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.23.655792

An autonomous AI agent for universal behavior analysis.

Aljović A, Lin Z, Wang W, et al. An autonomous AI agent for universal behavior analysis. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.15.653585

Mechanism of age-related accumulation of mitochondrial DNA mutations in human blood.

Gupta R, Durham TJ, Chau G, et al. Mechanism of age-related accumulation of mitochondrial DNA mutations in human blood. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.25.655566

Human genetic variation shapes the response of neurons to interferons.

Andzelm MM, Bolshakova S, Pettinari N, et al. Human genetic variation shapes the response of neurons to interferons. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.28.653507

SCOT+: A Comprehensive Software Suite for Single-Cell alignment Using Optimal Transport.

Baker C, Pham T, Demetci P, et al. SCOT+: A Comprehensive Software Suite for Single-Cell alignment Using Optimal Transport. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.21.655322

Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening Data.

Di Bernardo M, Kern RS, Mallar A, Nutter-Upham A, Blainey PC, Cheeseman I. Brieflow: An Integrated Computational Pipeline for High-Throughput Analysis of Optical Pooled Screening Data. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.26.656231

Cell-type-specific patterns and consequences of somatic mutation in development and aging brain.

Kriz AJ, Mao S, Shao DD, et al. Cell-type-specific patterns and consequences of somatic mutation in development and aging brain. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.30.656844

Increased Complement C4 in a Sparse Neuronal Subset Induces Network-Wide Transcriptomic Alterations in the Prefrontal Cortex.

Bolshakova S, Sifuentes SEC, Phadke RA, et al. Increased Complement C4 in a Sparse Neuronal Subset Induces Network-Wide Transcriptomic Alterations in the Prefrontal Cortex. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.05.29.656749

Development of a Novel Biomarker Platform for Profiling Key Protein-Protein Interactions to Predict the Efficacy of BH3-Mimetic Drugs.

Kinloch AJ, Rahman F, Karakas B, et al. Development of a Novel Biomarker Platform for Profiling Key Protein-Protein Interactions to Predict the Efficacy of BH3-Mimetic Drugs. Cancers. 2025;17(11). doi:10.3390/cancers17111852

Longitudinal Risk Prediction for Pediatric Glioma with Temporal Deep Learning.

Tak D, Garomsa BA, Zapaishchykova A, et al. Longitudinal Risk Prediction for Pediatric Glioma with Temporal Deep Learning. NEJM AI. 2025;2(5). doi:10.1056/aioa2400703