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Publications

Determinants of gastric cancer immune escape identified from non-coding immune-landscape quantitative trait loci.

Miliotis C, Ma Y, Katopodi XL, et al. Determinants of gastric cancer immune escape identified from non-coding immune-landscape quantitative trait loci. Nature communications. 2024;15(1):4319. doi:10.1038/s41467-024-48436-5

Elevated levels of IL-12/IL-23p40 in Nova Scotia Duck Tolling Retrievers with autoimmune disease and lymphoma.

Nilsson M, Kozyrev S V, Saellström S, et al. Elevated levels of IL-12/IL-23p40 in Nova Scotia Duck Tolling Retrievers with autoimmune disease and lymphoma. Scientific reports. 2024;14(1):11624. doi:10.1038/s41598-024-62265-y

Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development.

Zheng X, Wu B, Liu Y, et al. Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development. Cell. 2024. doi:10.1016/j.cell.2024.04.050

Molecular and cellular context influences SCN8A variant function.

Vanoye CG, Abramova T V, DeKeyser JM, et al. Molecular and cellular context influences SCN8A variant function. JCI insight. 2024. doi:10.1172/jci.insight.177530

Reversibly Reactive Affinity Selection-Mass Spectrometry Enables Identification of Covalent Peptide Binders.

Zhang P, Ye X, Wang JCK, et al. Reversibly Reactive Affinity Selection-Mass Spectrometry Enables Identification of Covalent Peptide Binders. Journal of the American Chemical Society. 2024. doi:10.1021/jacs.4c05571

ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets.

Samanta P, Cooke SF, McNulty R, Hormoz S, Rosenthal A. ProBac-seq, a bacterial single-cell RNA sequencing methodology using droplet microfluidics and large oligonucleotide probe sets. Nature protocols. 2024. doi:10.1038/s41596-024-01002-1

Implications of Race Adjustment in Lung-Function Equations.

Diao JA, He Y, Khazanchi R, et al. Implications of Race Adjustment in Lung-Function Equations. The New England journal of medicine. 2024. doi:10.1056/NEJMsa2311809

A Decade in a Systematic Review: The Evolution and Impact of Cell Painting.

Seal S, Trapotsi MA, Spjuth O, et al. A Decade in a Systematic Review: The Evolution and Impact of Cell Painting. ArXiv. 2024.

Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions.

Kotliar D, Curtis M, Agnew R, et al. Reproducible single cell annotation of programs underlying T-cell subsets, activation states, and functions. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.05.03.592310

KMT2D regulates activation, localization, and integrin expression by T-cells.

Potter SJ, Zhang L, Kotliar M, et al. KMT2D regulates activation, localization, and integrin expression by T-cells. Frontiers in immunology. 2024;15:1341745. doi:10.3389/fimmu.2024.1341745