Publications

DeepRegFinder: deep learning-based regulatory elements finder.

Ramakrishnan A, Wangensteen G, Kim S, Nestler EJ, Shen L. DeepRegFinder: deep learning-based regulatory elements finder. Bioinformatics advances. 2024;4(1):vbae007. doi:10.1093/bioadv/vbae007

Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis.

Meng Q, Zhao Y, Xu M, et al. Increased circulating regulatory T cells and decreased follicular T helper cells are associated with colorectal carcinogenesis. Frontiers in immunology. 2024;15:1287632. doi:10.3389/fimmu.2024.1287632

Generating new drug repurposing hypotheses using disease-specific hypergraphs.

Jain A, Charpignon ML, Chen IY, Philippakis A, Alaa A. Generating new drug repurposing hypotheses using disease-specific hypergraphs. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2024;29:261-275.

Polygenic risk for Alzheimer's disease is associated with neuroaxonal damage before onset of clinical symptoms.

Kagerer SM, Awasthi S, Ripke S, et al. Polygenic risk for Alzheimer’s disease is associated with neuroaxonal damage before onset of clinical symptoms. Alzheimer’s & dementia (Amsterdam, Netherlands). 2024;16(1):e12504. doi:10.1002/dad2.12504

Dog size and patterns of disease history across the canine age spectrum: Results from the Dog Aging Project.

Nam Y, White M, Karlsson EK, et al. Dog size and patterns of disease history across the canine age spectrum: Results from the Dog Aging Project. PloS one. 2024;19(1):e0295840. doi:10.1371/journal.pone.0295840

Decoding the epigenetics and chromatin loop dynamics of androgen receptor-mediated transcription.

Altıntaş UB, Seo JH, Giambartolomei C, et al. Decoding the epigenetics and chromatin loop dynamics of androgen receptor-mediated transcription. Nature communications. 2024;15(1):9494. doi:10.1038/s41467-024-53758-5

Combining NeuroPainting with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion.

Tegtmeyer M, Liyanage D, Han Y, et al. Combining NeuroPainting with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion. bioRxiv : the preprint server for biology. 2024. doi:10.1101/2024.11.16.623947

Distinct whole-body muscle MRI imaging patterns in PAX7-congenital myopathy: A case report.

Haliloğlu G, Donkervoort S, Yıldız SÖ, et al. Distinct whole-body muscle MRI imaging patterns in PAX7-congenital myopathy: A case report. Journal of neuromuscular diseases. 2024;11(6):1276-1282. doi:10.1177/22143602241289705

microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites.

Zacharopoulou E, Paraskevopoulou MD, Tastsoglou S, et al. microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites. Briefings in bioinformatics. 2024;26(1). doi:10.1093/bib/bbae678

microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites.

Zacharopoulou E, Paraskevopoulou MD, Tastsoglou S, et al. microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites. Briefings in bioinformatics. 2024;26(1). doi:10.1093/bib/bbae678

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Publications

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