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Publications

Multivariate adaptive shrinkage improves cross-population transcriptome prediction and association studies in underrepresented populations.

Araujo DS, Nguyen C, Hu X, et al. Multivariate adaptive shrinkage improves cross-population transcriptome prediction and association studies in underrepresented populations. HGG advances. 2023;4(4):100216. doi:10.1016/j.xhgg.2023.100216

Effects of fir-wood biochar on CH oxidation rates and methanotrophs in landfill cover soils packed at three different proctor compaction levels.

Yi SC, Heijbroek A, Cutz L, et al. Effects of fir-wood biochar on CH oxidation rates and methanotrophs in landfill cover soils packed at three different proctor compaction levels. The Science of the total environment. 2023:167951. doi:10.1016/j.scitotenv.2023.167951

Adversarial and variational autoencoders improve metagenomic binning.

Líndez PP, Johansen J, Kutuzova S, Sigurdsson AI, Nissen JN, Rasmussen S. Adversarial and variational autoencoders improve metagenomic binning. Communications biology. 2023;6(1):1073. doi:10.1038/s42003-023-05452-3

Liquid biopsy epigenomic profiling for cancer subtyping.

Baca SC, Seo JH, Davidsohn MP, et al. Liquid biopsy epigenomic profiling for cancer subtyping. Nature medicine. 2023. doi:10.1038/s41591-023-02605-z

Higher Maternal Body Mass Index is associated with Lower Placental Expression of EPYC: A Genome-Wide Transcriptomic Study.

Sordillo JE, White F, Majid S, et al. Higher Maternal Body Mass Index is associated with Lower Placental Expression of EPYC: A Genome-Wide Transcriptomic Study. The Journal of clinical endocrinology and metabolism. 2023. doi:10.1210/clinem/dgad619

SRCAP mutations drive clonal hematopoiesis through epigenetic and DNA repair dysregulation.

Chen CW, Zhang L, Dutta R, et al. SRCAP mutations drive clonal hematopoiesis through epigenetic and DNA repair dysregulation. Cell stem cell. 2023. doi:10.1016/j.stem.2023.09.011

Analyzing histone ChIP-seq data with a bin-based probability of being signal.

Hecht V, Dong K, Rajesh S, Shpilker P, Wekhande S, Shoresh N. Analyzing histone ChIP-seq data with a bin-based probability of being signal. PLoS computational biology. 2023;19(10):e1011568. doi:10.1371/journal.pcbi.1011568

Impact of piperaquine resistance in Plasmodium falciparum on malaria treatment effectiveness in French Guiana: a descriptive epidemiological study.

Florimond C, de Laval F, Early AM, et al. Impact of piperaquine resistance in Plasmodium falciparum on malaria treatment effectiveness in French Guiana: a descriptive epidemiological study. The Lancet. Infectious diseases. 2023. doi:10.1016/S1473-3099(23)00502-9

Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants.

Dolin R, Heale BSE, Gupta R, et al. Sync for Genes Phase 5: Computable artifacts for sharing dynamically annotated FHIR-formatted genomic variants. Learning health systems. 2023;7(4):e10385. doi:10.1002/lrh2.10385

The SARS-CoV-2 protein ORF3c is a mitochondrial modulator of innate immunity.

Stewart H, Lu Y, O’Keefe S, et al. The SARS-CoV-2 protein ORF3c is a mitochondrial modulator of innate immunity. iScience. 2023;26(11):108080. doi:10.1016/j.isci.2023.108080