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Publications

nELISA: a high-throughput, high-plex platform enables quantitative profiling of the inflammatory secretome.

Dagher M, Ongo G, Robichaud N, et al. nELISA: a high-throughput, high-plex platform enables quantitative profiling of the inflammatory secretome. Nature methods. 2025. doi:10.1038/s41592-025-02861-6

Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data.

Gorin G, Chari T, Carilli M, Vastola JJ, Pachter L. Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data. Nature methods. 2025. doi:10.1038/s41592-025-02832-x

Degradable cyclic amino alcohol ionizable lipids as vectors for potent influenza mRNA vaccines.

Rudra A, Gupta A, Reed K, et al. Degradable cyclic amino alcohol ionizable lipids as vectors for potent influenza mRNA vaccines. Nature nanotechnology. 2025. doi:10.1038/s41565-025-02044-6

MYC amplification and MYC protein expression are poor prognostic markers in pediatric and young adult osteosarcoma.

Nagy MR, Puopolo O, Alston E, et al. MYC amplification and MYC protein expression are poor prognostic markers in pediatric and young adult osteosarcoma. Cancer. 2025;131(22):e70161. doi:10.1002/cncr.70161

Global, regional and national burden of epilepsy in children and adolescents, 1990-2021: A systematic analysis for the Global Burden of Disease Study 2021.

Kim YS, Kim MS, Park S, et al. Global, regional and national burden of epilepsy in children and adolescents, 1990-2021: A systematic analysis for the Global Burden of Disease Study 2021. European journal of clinical investigation. 2025:e70139. doi:10.1111/eci.70139

T2 Coach: A Qualitative Study of an Automated Health Coach for Diabetes Self-Management.

Mitchell EG, Desai P, Smaldone A, et al. T2 Coach: A Qualitative Study of an Automated Health Coach for Diabetes Self-Management. Proceedings of the SIGCHI conference on human factors in computing systems. CHI Conference. 2025;2025. doi:10.1145/3706598.3714404

PMCID

PMC12587852

Accelerated biological aging and its hallmarks in DNA methylation drive the association between unhealthy lifestyles and the onset of colorectal cancer.

Sun J, Liu M, Zhang X, et al. Accelerated biological aging and its hallmarks in DNA methylation drive the association between unhealthy lifestyles and the onset of colorectal cancer. EBioMedicine. 2025;122:106005. doi:10.1016/j.ebiom.2025.106005

Murder in cold blood? Forensic and bioarchaeological identification of the skeletal remains of Béla, Duke of Macsó (c. 1245-1272).

Hajdu T, Borbély N, Bernert Z, et al. Murder in cold blood? Forensic and bioarchaeological identification of the skeletal remains of Béla, Duke of Macsó (c. 1245-1272). Forensic science international. Genetics. 2025;81:103381. doi:10.1016/j.fsigen.2025.103381

scCausalVI disentangles single-cell perturbation responses with causality-aware generative model.

An S, Cho JW, Cao K, Xiong J, Hemberg M, Wan L. scCausalVI disentangles single-cell perturbation responses with causality-aware generative model. Cell systems. 2025:101443. doi:10.1016/j.cels.2025.101443

Author Correction: Enhancing randomized clinical trials with digital twins.

Akbarialiabad H, Pasdar A, Murrell DF, et al. Author Correction: Enhancing randomized clinical trials with digital twins. NPJ systems biology and applications. 2025;11(1):124. doi:10.1038/s41540-025-00609-8