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Publications

The impact of exercise on skeletal muscle proteome of prediabetic subjects analyzed with data independent mass spectrometry.

Czajkowska A, Szczerbiński Ł, Czajkowski M, et al. The impact of exercise on skeletal muscle proteome of prediabetic subjects analyzed with data independent mass spectrometry. Scientific reports. 2025;15(1):28988. doi:10.1038/s41598-025-13942-z

Molecular basis for targeting TBK1 in CAR-T cell therapies for cancer.

Cattaneo G, Ventin M, Maggs L, Sun Y, Ferrone CR, Jenkins RW. Molecular basis for targeting TBK1 in CAR-T cell therapies for cancer. Expert opinion on therapeutic targets. 2025;29(8):517-521. doi:10.1080/14728222.2025.2545845

An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut.

Xu RJ, Cadinu P, Nicol PB, et al. An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.21.665958

Adrenergic signaling coordinates distant and local responses to amputation in axolotl.

Payzin-Dogru D, Froitzheim T, Blair SJ, et al. Adrenergic signaling coordinates distant and local responses to amputation in axolotl. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2021.12.29.474455

Deep-learning triage of 3D pathology datasets for comprehensive and efficient pathologist assessments.

Gao G, Yan R, Song AH, et al. Deep-learning triage of 3D pathology datasets for comprehensive and efficient pathologist assessments. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.20.665804

Endogenous gene editing of alveolar organoids reveals that expression of pathogenic variant SFTPC-I73T disrupts endosomal function, epithelial polarity and wound healing.

Rutherford EN, Sun D, Lim K, et al. Endogenous gene editing of alveolar organoids reveals that expression of pathogenic variant SFTPC-I73T disrupts endosomal function, epithelial polarity and wound healing. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.22.665497

Segmental copy number amplifications are stable in the absence of selection.

De T, Ben Nun N, Spealman P, et al. Segmental copy number amplifications are stable in the absence of selection. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.21.665951

TGF-β Coordinates Alanine Synthesis and Import for Myofibroblast Differentiation in Pulmonary Fibrosis.

Li F, Vigder N, Ziehr DR, et al. TGF-β Coordinates Alanine Synthesis and Import for Myofibroblast Differentiation in Pulmonary Fibrosis. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.07.23.666333

Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2.

Levy JI, Gangavarapu P, Pilz DA, et al. Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.07.26.25332245

Implementing a context-augmented large language model to guide precision cancer medicine.

Jun H, Tanaka Y, Johri S, et al. Implementing a context-augmented large language model to guide precision cancer medicine. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.05.09.25327312