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Publications

Whole Genome Analysis of Venous Thromboembolism: the Trans-Omics for Precision Medicine Program.

Seyerle AA, Laurie CA, Coombes BJ, et al. Whole Genome Analysis of Venous Thromboembolism: the Trans-Omics for Precision Medicine Program. Circulation. Genomic and precision medicine. 2023;16(2):e003532. doi:10.1161/CIRCGEN.121.003532

Plasma lipidome and risk of atrial fibrillation: results from the PREDIMED trial.

Toledo E, Wittenbecher C, Razquin C, et al. Plasma lipidome and risk of atrial fibrillation: results from the PREDIMED trial. Journal of physiology and biochemistry. 2023. doi:10.1007/s13105-023-00958-0

Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients.

Tsai PC, Lee TH, Kuo KC, et al. Histopathology images predict multi-omics aberrations and prognoses in colorectal cancer patients. Nature communications. 2023;14(1):2102. doi:10.1038/s41467-023-37179-4

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility.

Salvatore M, Horlacher M, Marsico A, Winther O, Andersson R. Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility. NAR genomics and bioinformatics. 2023;5(2):lqad026. doi:10.1093/nargab/lqad026

Immunometabolism at the crossroads of obesity and cancer-a Keystone Symposia report.

Cable J, Rathmell JC, Pearce EL, et al. Immunometabolism at the crossroads of obesity and cancer-a Keystone Symposia report. Annals of the New York Academy of Sciences. 2023;1523(1):38-50. doi:10.1111/nyas.14976

Predicting ExWAS findings from GWAS data: a shorter path to causal genes.

Liang KYH, Farjoun Y, Forgetta V, et al. Predicting ExWAS findings from GWAS data: a shorter path to causal genes. Human genetics. 2023;142(6):749-758. doi:10.1007/s00439-023-02548-y

Diagnostic TR-FRET assays for detection of antibodies in patient samples.

Yue H, Nowak RP, Overwijn D, et al. Diagnostic TR-FRET assays for detection of antibodies in patient samples. Cell reports methods. 2023;3(3):100421. doi:10.1016/j.crmeth.2023.100421

Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.

Maranga M, Szczerbiak P, Bezshapkin V, et al. Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method. mSystems. 2023;8(2):e0117822. doi:10.1128/msystems.01178-22

Editorial: Bioinformatics analysis tools for nanopore sequencing and applications.

Lang J, Yang J, Xu M. Editorial: Bioinformatics analysis tools for nanopore sequencing and applications. Frontiers in bioengineering and biotechnology. 2023;11:1189769. doi:10.3389/fbioe.2023.1189769

Genetic and Clinical Factors Underlying a Self-Reported Family History of Heart Disease.

Jowell A, Bhattacharya R, Marnell C, et al. Genetic and Clinical Factors Underlying a Self-Reported Family History of Heart Disease. European journal of preventive cardiology. 2023. doi:10.1093/eurjpc/zwad096