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Publications

Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changes.

Luebbert L, Sullivan DK, Carilli M, et al. Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changes. Nature biotechnology. 2025. doi:10.1038/s41587-025-02614-y

Metabolomic profiling of a cholesterol lowering plant-based diet from two randomized controlled feeding trials.

Glenn AJ, Tessier AJ, Kavanagh ME, et al. Metabolomic profiling of a cholesterol lowering plant-based diet from two randomized controlled feeding trials. European journal of clinical nutrition. 2025. doi:10.1038/s41430-025-01625-x

The Vodka Trial: Clinical and Genetic Characteristics of Alcohol Responsiveness in Laryngeal Dystonia.

O’Flynn LC, Domingo A, Sichani AH, et al. The Vodka Trial: Clinical and Genetic Characteristics of Alcohol Responsiveness in Laryngeal Dystonia. Movement disorders clinical practice. 2025. doi:10.1002/mdc3.70097

The Vodka Trial: Clinical and Genetic Characteristics of Alcohol Responsiveness in Laryngeal Dystonia.

O’Flynn LC, Domingo A, Sichani AH, et al. The Vodka Trial: Clinical and Genetic Characteristics of Alcohol Responsiveness in Laryngeal Dystonia. Movement disorders clinical practice. 2025. doi:10.1002/mdc3.70097

Global, regional and national burden of dietary iron deficiency from 1990 to 2021: a Global Burden of Disease study.

Lee S, Son Y, Hwang J, et al. Global, regional and national burden of dietary iron deficiency from 1990 to 2021: a Global Burden of Disease study. Nature medicine. 2025. doi:10.1038/s41591-025-03624-8

A genetic variant associated with Aquaporin 3 expression is correlated to in-hospital death in COVID-19 patients with extracellular hyperosmolality.

Marks-Hultström M, Marks AM, Butler-Laporte G, et al. A genetic variant associated with Aquaporin 3 expression is correlated to in-hospital death in COVID-19 patients with extracellular hyperosmolality. Physiological genomics. 2025. doi:10.1152/physiolgenomics.00174.2024

Single-cell Epigenomic Profiling with High-throughput Droplet scChIP-seq.

Marsolier J, Moutaux E, Grosselin K, Griffiths A, Vallot C. Single-cell Epigenomic Profiling with High-throughput Droplet scChIP-seq. Methods in molecular biology (Clifton, N.J.). 2025;2919:213-239. doi:10.1007/978-1-0716-4486-7_12

Non-adherence to guidelines for genetic testing in families with ovarian cancer shows racial bias.

Omorodion JO, Nathan A, Lipsitz S, et al. Non-adherence to guidelines for genetic testing in families with ovarian cancer shows racial bias. Genetics in medicine : official journal of the American College of Medical Genetics. 2025:101444. doi:10.1016/j.gim.2025.101444

Establishing Methods to Monitor Influenza (A)H5N1 Virus in Dairy Cattle Milk, Massachusetts, USA.

Stachler E, Gnirke A, McMahon K, et al. Establishing Methods to Monitor Influenza (A)H5N1 Virus in Dairy Cattle Milk, Massachusetts, USA. Emerging infectious diseases. 2025;31(13). doi:10.3201/eid3113.250087

Transcriptome-wide analysis of differential expression in perturbation atlases.

Nadig A, Replogle JM, Pogson AN, et al. Transcriptome-wide analysis of differential expression in perturbation atlases. Nature genetics. 2025. doi:10.1038/s41588-025-02169-3