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Publications

DIANA-microT 2023: including predicted targets of virally encoded miRNAs.

Tastsoglou S, Alexiou A, Karagkouni D, Skoufos G, Zacharopoulou E, Hatzigeorgiou AG. DIANA-microT 2023: including predicted targets of virally encoded miRNAs. Nucleic acids research. 2023. doi:10.1093/nar/gkad283

CRISPR-Cas-amplified urinary biomarkers for multiplexed and portable cancer diagnostics.

Hao L, Zhao RT, Welch NL, et al. CRISPR-Cas-amplified urinary biomarkers for multiplexed and portable cancer diagnostics. Nature nanotechnology. 2023. doi:10.1038/s41565-023-01372-9

The human E3 ligase RNF185 is a regulator of the SARS-CoV-2 envelope protein.

Zou C, Yoon H, Park PMC, et al. The human E3 ligase RNF185 is a regulator of the SARS-CoV-2 envelope protein. iScience. 2023;26(5):106601. doi:10.1016/j.isci.2023.106601

Clinicopathologic, genomic, and immunophenotypic landscape of ATM mutations in non-small cell lung cancer.

Ricciuti B, Elkrief A, Alessi J, et al. Clinicopathologic, genomic, and immunophenotypic landscape of ATM mutations in non-small cell lung cancer. Clinical cancer research : an official journal of the American Association for Cancer Research. 2023. doi:10.1158/1078-0432.CCR-22-3413

Review of databases for experimentally validated human microRNA-mRNA interactions.

Kariuki D, Asam K, Aouizerat BE, Lewis KA, Florez JC, Flowers E. Review of databases for experimentally validated human microRNA-mRNA interactions. Database : the journal of biological databases and curation. 2023;2023. doi:10.1093/database/baad014

Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors and metastases.

Jailkhani N, Clauser KR, Mak HH, et al. Proteomic profiling of extracellular matrix components from patient metastases identifies consistently elevated proteins for developing nanobodies that target primary tumors and metastases. Cancer research. 2023. doi:10.1158/0008-5472.CAN-22-1532

Advances in Artificial Intelligence for Infectious-Disease Surveillance.

Brownstein JS, Rader B, Astley CM, Tian H. Advances in Artificial Intelligence for Infectious-Disease Surveillance. The New England journal of medicine. 2023;388(17):1597-1607. doi:10.1056/NEJMra2119215

A survey on algorithms to characterize transcription factor binding sites.

Tognon M, Giugno R, Pinello L. A survey on algorithms to characterize transcription factor binding sites. Briefings in bioinformatics. 2023. doi:10.1093/bib/bbad156

Sequence-structure-function relationships in the microbial protein universe.

Leman JK, Szczerbiak P, Renfrew D, et al. Sequence-structure-function relationships in the microbial protein universe. Nature communications. 2023;14(1):2351. doi:10.1038/s41467-023-37896-w

MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions.

Zhong Z, Xue Y, Harris J, et al. MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions. Genome biology. 2023;24(1):96. doi:10.1186/s13059-023-02939-4