Publications

Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System.

Yu CH, Sephton-Clark P, Tenor JL, et al. Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System. mBio. 2021;12(6):e0231321. doi:10.1128/mBio.02313-21

Proximity-Labeling Reveals Novel Host and Parasite Proteins at the Parasitophorous Vacuole Membrane.

Cygan AM, Beltran PMJ, Mendoza AG, et al. Proximity-Labeling Reveals Novel Host and Parasite Proteins at the Parasitophorous Vacuole Membrane. mBio. 2021;12(6):e0026021. doi:10.1128/mBio.00260-21

Chronos: a cell population dynamics model of CRISPR experiments that improves inference of gene fitness effects.

Dempster JM, Boyle I, Vazquez F, et al. Chronos: a cell population dynamics model of CRISPR experiments that improves inference of gene fitness effects. Genome Biol. 2021;22(1):343. doi:10.1186/s13059-021-02540-7

Analytical protocol to identify local ancestry-associated molecular features in cancer.

Carrot-Zhang J, Han S, Zhou W, et al. Analytical protocol to identify local ancestry-associated molecular features in cancer. STAR Protoc. 2021;2(4):100766. doi:10.1016/j.xpro.2021.100766

Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content.

Romsdahl J, Schultzhaus Z, Cuomo CA, et al. Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content. J Fungi (Basel). 2021;7(12). doi:10.3390/jof7121078

A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening.

Boivin B, Roet KCD, Huang X, et al. A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening. Mol Biol Cell. 2021:mbcE21100481. doi:10.1091/mbc.E21-10-0481

In vivo emergence of high-level resistance during treatment reveals the first identified mechanism of amphotericin B resistance in Candida auris.

Rybak JM, Barker KS, Muñoz JF, et al. In vivo emergence of high-level resistance during treatment reveals the first identified mechanism of amphotericin B resistance in Candida auris. Clin Microbiol Infect. 2021. doi:10.1016/j.cmi.2021.11.024

Identification of Inhibitors of Fungal Fatty Acid Biosynthesis.

DeJarnette C, Meyer CJ, Jenner AR, et al. Identification of Inhibitors of Fungal Fatty Acid Biosynthesis. ACS Infect Dis. 2021;7(12):3210-3223. doi:10.1021/acsinfecdis.1c00404

Selection of 51 predictors from 13,782 candidate multimodal features using machine learning improves coronary artery disease prediction.

Agrawal S, Klarqvist MDR, Emdin C, et al. Selection of 51 predictors from 13,782 candidate multimodal features using machine learning improves coronary artery disease prediction. Patterns (N Y). 2021;2(12):100364. doi:10.1016/j.patter.2021.100364

Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer.

Raghavan S, Winter PS, Navia AW, et al. Microenvironment drives cell state, plasticity, and drug response in pancreatic cancer. Cell. 2021;184(25):6119-6137.e26. doi:10.1016/j.cell.2021.11.017

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Publications

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