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Publications

CRATER tumor niches facilitate CD8 T cell engagement and correspond with immunotherapy success.

Ludin A, Stirtz GL, Tal A, et al. CRATER tumor niches facilitate CD8 T cell engagement and correspond with immunotherapy success. Cell. 2025. doi:10.1016/j.cell.2025.09.021

A machine learning framework for classifying lipids in untargeted metabolomics using mass-to-charge ratios and retention times.

Colin-Leitzinger C, Mekonnen YA, Narvaez-Bandera I, et al. A machine learning framework for classifying lipids in untargeted metabolomics using mass-to-charge ratios and retention times. Metabolomics : Official journal of the Metabolomic Society. 2025;21(6):151. doi:10.1007/s11306-025-02343-y

Long shared haplotypes identify the southern Urals as a primary source for the 10th-century Hungarians.

Gyuris B, Vyazov L, Türk A, et al. Long shared haplotypes identify the southern Urals as a primary source for the 10th-century Hungarians. Cell. 2025;188(21):6064-6078.e11. doi:10.1016/j.cell.2025.09.002

Dynamics of microcompartment formation at the mitosis-to-G1 transition.

Goel VY, Aboreden NG, Jusuf JM, et al. Dynamics of microcompartment formation at the mitosis-to-G1 transition. Nature structural & molecular biology. 2025. doi:10.1038/s41594-025-01687-2

Engineered 3D immuno-glial-neurovascular human miBrain model.

Stanton AE, Bubnys A, Agbas E, et al. Engineered 3D immuno-glial-neurovascular human miBrain model. Proceedings of the National Academy of Sciences of the United States of America. 2025;122(42):e2511596122. doi:10.1073/pnas.2511596122

Integrated spatial morpho-transcriptomics predicts functional traits in pancreatic cancer.

Gong D, Liu R, Cui Y, et al. Integrated spatial morpho-transcriptomics predicts functional traits in pancreatic cancer. Science advances. 2025;11(42):eadx0632. doi:10.1126/sciadv.adx0632

Somatic mutations in STAG2 are associated with separated megakaryocyte nuclear lobes in myelodysplastic syndromes.

Wong WJ, Zon RL, Gibson CJ, et al. Somatic mutations in STAG2 are associated with separated megakaryocyte nuclear lobes in myelodysplastic syndromes. Blood advances. 2025;9(20):5283-5288. doi:10.1182/bloodadvances.2025016897

Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell data.

Li R, Alberge JB, Keshavarzian T, et al. Numbat-multiome: inferring copy number variations by combining RNA and chromatin accessibility information from single-cell data. Briefings in bioinformatics. 2025;26(5). doi:10.1093/bib/bbaf516

ID2 suppresses multiple myeloma cell proliferation by repressing the activity of the transcription factor TCF3.

Fulciniti M, Yao Y, Perini T, et al. ID2 suppresses multiple myeloma cell proliferation by repressing the activity of the transcription factor TCF3. Blood cancer discovery. 2025. doi:10.1158/2643-3230.BCD-25-0048

Deep-learning-derived neuroimaging biomarkers of sarcopenia as predictors of outcome in endovascular thrombectomy in large vessel occlusion acute ischemic stroke.

Teo KSH, Tan BY, Teo YN, et al. Deep-learning-derived neuroimaging biomarkers of sarcopenia as predictors of outcome in endovascular thrombectomy in large vessel occlusion acute ischemic stroke. Interventional neuroradiology : journal of peritherapeutic neuroradiology, surgical procedures and related neurosciences. 2025:15910199251386116. doi:10.1177/15910199251386116