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Publications

Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design.

Armer C, Kane H, Cortade DL, et al. Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design. Proteins. 2025. doi:10.1002/prot.70008

The World Needs a PEPP Policy that Addresses Biosafety Loopholes Highlighted by the COVID-19 Pandemic.

Chan A. The World Needs a PEPP Policy that Addresses Biosafety Loopholes Highlighted by the COVID-19 Pandemic. Applied biosafety : journal of the American Biological Safety Association. 2025;30(2):146-150. doi:10.1089/apb.2024.0041

Resident memory T cell development is gradual and shows AP-1 gene expression in mature cells.

Smith NP, Yan Y, Pan Y, et al. Resident memory T cell development is gradual and shows AP-1 gene expression in mature cells. JCI insight. 2025;10(12). doi:10.1172/jci.insight.187381

Characterizing PET CT patterns and bacterial dissemination features of tuberculosis relapse in the macaque model.

Maiello P, Diedrich C, Rutledge T, et al. Characterizing PET CT patterns and bacterial dissemination features of tuberculosis relapse in the macaque model. Infection and immunity. 2025;93(8):e0017725. doi:10.1128/iai.00177-25

PINK1/Parkin Deficiency Enhances Vascular Remodeling and Aggravates Hypoxia-induced Pulmonary Hypertension.

Rehman R, Dieffenbach P, Vellarikkal SK, et al. PINK1/Parkin Deficiency Enhances Vascular Remodeling and Aggravates Hypoxia-induced Pulmonary Hypertension. American journal of respiratory cell and molecular biology. 2025. doi:10.1165/rcmb.2024-0349OC

The association of objectively and subjectively measured modifiable lifestyle factors with internalizing problems: the role of genetic confounding and shared method variance bias.

Zhang Y, Choi KW, Frach L, et al. The association of objectively and subjectively measured modifiable lifestyle factors with internalizing problems: the role of genetic confounding and shared method variance bias. Social psychiatry and psychiatric epidemiology. 2025. doi:10.1007/s00127-025-02952-x

CellMemory: hierarchical interpretation of out-of-distribution cells using bottlenecked transformer.

Wang Q, Zhu H, Hu Y, et al. CellMemory: hierarchical interpretation of out-of-distribution cells using bottlenecked transformer. Genome biology. 2025;26(1):178. doi:10.1186/s13059-025-03638-y

Multi-omics approach identifies a novel recessive pathogenic variant in the TNNT3 gene in two siblings with congenital myopathy.

Müller JS, Rabinowicz S, Zaharieva I, et al. Multi-omics approach identifies a novel recessive pathogenic variant in the TNNT3 gene in two siblings with congenital myopathy. Neuromuscular disorders : NMD. 2025;52:105415. doi:10.1016/j.nmd.2025.105415

Single-cell transcriptome-wide Mendelian randomization and colocalization analyses uncover cell-specific mechanisms in atherosclerotic cardiovascular disease.

Ray A, Alabarse P, Malik R, et al. Single-cell transcriptome-wide Mendelian randomization and colocalization analyses uncover cell-specific mechanisms in atherosclerotic cardiovascular disease. American journal of human genetics. 2025;112(7):1597-1609. doi:10.1016/j.ajhg.2025.06.001

Ancient DNA reveals diverse community organizations in the 5th millennium BCE Carpathian Basin.

Szécsényi-Nagy A, Virag C, Jakab K, et al. Ancient DNA reveals diverse community organizations in the 5th millennium BCE Carpathian Basin. Nature communications. 2025;16(1):5318. doi:10.1038/s41467-025-60368-2