Publications

Finding easy regions for short-read variant calling from pangenome data.

Li H. Finding easy regions for short-read variant calling from pangenome data. GigaScience. 2025;14. doi:10.1093/gigascience/giaf103

Association between sodium-glucose Co-transporter-2 inhibitor use and prognosis in underweight patients with diabetes mellitus and heart failure.

Fujimoto Y, Kida K, Suzuki N, et al. Association between sodium-glucose Co-transporter-2 inhibitor use and prognosis in underweight patients with diabetes mellitus and heart failure. Clinical nutrition ESPEN. 2025;69:767-774. doi:10.1016/j.clnesp.2025.08.031

Prospective study of circulating metabolomic profiles and breast cancer incidence among predominantly premenopausal women.

Wang T, Zeleznik OA, McGee EE, et al. Prospective study of circulating metabolomic profiles and breast cancer incidence among predominantly premenopausal women. British journal of cancer. 2025. doi:10.1038/s41416-025-03159-2

Phenotypic screening converges on CDK9 inhibition as a therapeutic strategy in translocation renal cell carcinoma.

Thapa DR, Deodhar R, Skepner A, et al. Phenotypic screening converges on CDK9 inhibition as a therapeutic strategy in translocation renal cell carcinoma. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.25.672235

Affinity Maturation and Light-Chain-Mediated Paratope Diversification Anticipate Viral Evolution.

Dingus J, Yoo DK, Kumar S, et al. Affinity Maturation and Light-Chain-Mediated Paratope Diversification Anticipate Viral Evolution. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.27.672735

Positive Selection Screen for Natural Product β-Catenin Inactivators.

Boudreau MW, Freire VF, Corbett SC, et al. Positive Selection Screen for Natural Product β-Catenin Inactivators. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.27.671140

Ergosterol-depleted clinical isolates of can develop multi-drug resistance without apparent fitness and virulence defects.

Aldejohann AM, Thielemann N, Zurita AM, et al. Ergosterol-depleted clinical isolates of can develop multi-drug resistance without apparent fitness and virulence defects. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.28.672802

Endocytome profiling uncovers cell-surface protein dynamics underlying neuronal connectivity.

McLaughlin CN, Ji H, Dong KX, et al. Endocytome profiling uncovers cell-surface protein dynamics underlying neuronal connectivity. bioRxiv : the preprint server for biology. 2025. doi:10.1101/2025.08.28.672852

Multi-Trait Polygenic Scores for COPD and COPD Exacerbations Implicate Druggable Proteins.

Zhang C, Konigsberg IR, He Y, et al. Multi-Trait Polygenic Scores for COPD and COPD Exacerbations Implicate Druggable Proteins. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.08.22.25334001

Multi-Platform Curation in the Development of ACMG/AMP Specifications for Von Hippel Lindau (VHL) Disease.

Ritter DI, Badduke C, Doonanco K, et al. Multi-Platform Curation in the Development of ACMG/AMP Specifications for Von Hippel Lindau (VHL) Disease. medRxiv : the preprint server for health sciences. 2025. doi:10.1101/2025.08.25.25334371