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Imaging Platform
Carpenter AE, Singh S. Bringing computation to biology by bridging the last mile. Nature cell biology. 2024;26(1):5-7. doi:10.1038/s41556-023-01286-7
Lacoste J, Haghighi M, Haider S, et al. Pervasive mislocalization of pathogenic coding variants underlying human disorders. Cell. 2024. doi:10.1016/j.cell.2024.09.003
Weisbart E, Kumar A, Arevalo J, Carpenter AE, Cimini BA, Singh S. Cell Painting Gallery: an open resource for image-based profiling. Nature methods. 2024. doi:10.1038/s41592-024-02399-z
Arevalo J, Su E, Ewald JD, van Dijk R, Carpenter AE, Singh S. Evaluating batch correction methods for image-based cell profiling. Nature communications. 2024;15(1):6516. doi:10.1038/s41467-024-50613-5
Cimini BA, Bankhead P, D’Antuono R, et al. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science. 2024;137(20). doi:10.1242/jcs.262322
van Dijk R, Arevalo J, Babadi M, Carpenter AE, Singh S. Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. PLoS computational biology. 2024;20(11):e1012547. doi:10.1371/journal.pcbi.1012547
Seal S, Williams D, Hosseini-Gerami L, et al. Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data. Chemical research in toxicology. 2024. doi:10.1021/acs.chemrestox.4c00015
Serrano E, Chandrasekaran SN, Bunten D, et al. Reproducible image-based profiling with Pycytominer. ArXiv. 2024.
Cimini BA, Tromans-Coia C, Stirling DR, et al. A postdoctoral training program in bioimage analysis. Molecular biology of the cell. 2024;35(9):pe2. doi:10.1091/mbc.E24-05-0214