Weisbart E, Tromans-Coia C, Diaz-Rohrer B, et al. CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools. ArXiv. 2023.
Imaging Platform
Sivagurunathan S, Marcotti S, Nelson CJ, et al. Bridging Imaging Users to Imaging Analysis - A community survey. Journal of microscopy. 2023. doi:10.1111/jmi.13229
Kelley ME, Berman AY, Stirling DR, et al. High-content microscopy reveals a morphological signature of bortezomib resistance. eLife. 2023;12. doi:10.7554/eLife.91362
Tromans-Coia C, Jamali N, Abbasi HS, et al. Assessing the performance of the Cell Painting assay across different imaging systems. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2023. doi:10.1002/cyto.a.24786
Garcia-Fossa F, Cruz MC, Haghighi M, et al. Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization. Current protocols. 2023;3(3):e713. doi:10.1002/cpz1.713
Moshkov N, Becker T, Yang K, et al. Predicting compound activity from phenotypic profiles and chemical structures. Nature communications. 2023;14(1):1967. doi:10.1038/s41467-023-37570-1
Wakui T, Negishi M, Murakami Y, et al. Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells. Molecular biology of the cell. 2023;34(5):ar45. doi:10.1091/mbc.E22-06-0215
Dahlin JL, Hua BK, Zucconi BE, et al. Reference compounds for characterizing cellular injury in high-content cellular morphology assays. Nature communications. 2023;14(1):1364. doi:10.1038/s41467-023-36829-x
Berryer MH, Rizki G, Nathanson A, et al. High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly. eLife. 2023;12. doi:10.7554/eLife.80168
Wieder N, Fried J, Kim C, et al. FALCON systematically interrogates free fatty acid biology and identifies a novel mediator of lipotoxicity. Cell metabolism. 2023. doi:10.1016/j.cmet.2023.03.018