ӳ��ý

Imaging Platform

2020 BioImage Analysis Survey: Community experiences and needs for the future.

Jamali N, Dobson ET, Eliceiri KW, Carpenter AE, Cimini BA. 2020 BioImage Analysis Survey: Community experiences and needs for the future. Biol Imaging. 2022;1. doi:10.1017/S2633903X21000039

Morphology and gene expression profiling provide complementary information for mapping cell state.

Way G, Natoli T, Adeboye A, et al. Morphology and gene expression profiling provide complementary information for mapping cell state. Cell systems. 2022;13(11):911-923.e9. doi:10.1016/j.cels.2022.10.001

A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening.

Boivin B, Roet KCD, Huang X, et al. A Multiparametric Activity Profiling Platform for Neuron Disease Phenotyping and Drug Screening. Mol Biol Cell. 2021:mbcE21100481. doi:10.1091/mbc.E21-10-0481

A field guide to cultivating computational biology.

Way GP, Greene CS, Carninci P, et al. A field guide to cultivating computational biology. PLoS Biol. 2021;19(10):e3001419. doi:10.1371/journal.pbio.3001419

CellProfiler 4: improvements in speed, utility and usability.

Stirling DR, Swain-Bowden MJ, Lucas AM, Carpenter AE, Cimini BA, Goodman A. CellProfiler 4: improvements in speed, utility and usability. BMC Bioinformatics. 2021;22(1):433. doi:10.1186/s12859-021-04344-9

CellProfiler Analyst 3.0: Accessible data exploration and machine learning for image analysis.

Stirling DR, Carpenter AE, Cimini BA. CellProfiler Analyst 3.0: Accessible data exploration and machine learning for image analysis. Bioinformatics. 2021. doi:10.1093/bioinformatics/btab634

Genes in human obesity loci are causal obesity genes in C. elegans.

Ke W, Reed JN, Yang C, et al. Genes in human obesity loci are causal obesity genes in C. elegans. PLoS Genet. 2021;17(9):e1009736. doi:10.1371/journal.pgen.1009736

Inter-laboratory automation of the in vitro micronucleus assay using imaging flow cytometry and deep learning.

Wills JW, Verma JR, Rees BJ, et al. Inter-laboratory automation of the in vitro micronucleus assay using imaging flow cytometry and deep learning. Arch Toxicol. 2021;95(9):3101-3115. doi:10.1007/s00204-021-03113-0

Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry.

Doan M, Barnes C, McQuin C, et al. Deepometry, a framework for applying supervised and weakly supervised deep learning to imaging cytometry. Nat Protoc. 2021;16(7):3572-3595. doi:10.1038/s41596-021-00549-7

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging.

Tomov ML, O’Neil A, Abbasi HS, et al. Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging. Commun Biol. 2021;4(1):786. doi:10.1038/s42003-021-02276-x