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Imaging Platform

Cell Painting: a decade of discovery and innovation in cellular imaging.

Seal S, Trapotsi MA, Spjuth O, et al. Cell Painting: a decade of discovery and innovation in cellular imaging. Nature methods. 2024. doi:10.1038/s41592-024-02528-8

Building momentum through networks: Bioimaging across the Americas.

De Niz M, García RE, Ramirez CT, et al. Building momentum through networks: Bioimaging across the Americas. Journal of microscopy. 2024. doi:10.1111/jmi.13318

Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data.

Seal S, Williams D, Hosseini-Gerami L, et al. Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data. Chemical research in toxicology. 2024. doi:10.1021/acs.chemrestox.4c00015

A postdoctoral training program in bioimage analysis.

Cimini BA, Tromans-Coia C, Stirling DR, et al. A postdoctoral training program in bioimage analysis. Molecular biology of the cell. 2024;35(9):pe2. doi:10.1091/mbc.E24-05-0214

Evaluating batch correction methods for image-based cell profiling.

Arevalo J, Su E, Ewald JD, van Dijk R, Carpenter AE, Singh S. Evaluating batch correction methods for image-based cell profiling. Nature communications. 2024;15(1):6516. doi:10.1038/s41467-024-50613-5

Cell Painting Gallery: an open resource for image-based profiling.

Weisbart E, Kumar A, Arevalo J, Carpenter AE, Cimini BA, Singh S. Cell Painting Gallery: an open resource for image-based profiling. Nature methods. 2024. doi:10.1038/s41592-024-02399-z

The crucial role of bioimage analysts in scientific research and publication.

Cimini BA, Bankhead P, D’Antuono R, et al. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science. 2024;137(20). doi:10.1242/jcs.262322

Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization.

Garcia-Fossa F, Cruz MC, Haghighi M, et al. Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization. Current protocols. 2023;3(3):e713. doi:10.1002/cpz1.713

Predicting compound activity from phenotypic profiles and chemical structures.

Moshkov N, Becker T, Yang K, et al. Predicting compound activity from phenotypic profiles and chemical structures. Nature communications. 2023;14(1):1967. doi:10.1038/s41467-023-37570-1

Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells.

Wakui T, Negishi M, Murakami Y, et al. Predicting reprogramming-related gene expression from cell morphology in human induced pluripotent stem cells. Molecular biology of the cell. 2023;34(5):ar45. doi:10.1091/mbc.E22-06-0215