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Imaging Platform

From Pixels to Phenotypes: Integrating Image-Based Profiling with Cell Health Data Improves Interpretability.

Seal S, Carreras-Puigvert J, Singh S, Carpenter AE, Spjuth O, Bender A. From Pixels to Phenotypes: Integrating Image-Based Profiling with Cell Health Data Improves Interpretability. Molecular biology of the cell. 2024:mbcE23080298. doi:10.1091/mbc.E23-08-0298

Understanding metric-related pitfalls in image analysis validation.

Reinke A, Tizabi MD, Baumgartner M, et al. Understanding metric-related pitfalls in image analysis validation. Nature methods. 2024. doi:10.1038/s41592-023-02150-0

The multimodality cell segmentation challenge: toward universal solutions.

Ma J, Xie R, Ayyadhury S, et al. The multimodality cell segmentation challenge: toward universal solutions. Nature methods. 2024. doi:10.1038/s41592-024-02233-6

Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data.

Seal S, Williams D, Hosseini-Gerami L, et al. Improved Detection of Drug-Induced Liver Injury by Integrating Predicted In Vivo and In Vitro Data. Chemical research in toxicology. 2024. doi:10.1021/acs.chemrestox.4c00015

A postdoctoral training program in bioimage analysis.

Cimini BA, Tromans-Coia C, Stirling DR, et al. A postdoctoral training program in bioimage analysis. Molecular biology of the cell. 2024;35(9):pe2. doi:10.1091/mbc.E24-05-0214

Evaluating batch correction methods for image-based cell profiling.

Arevalo J, Su E, Ewald JD, van Dijk R, Carpenter AE, Singh S. Evaluating batch correction methods for image-based cell profiling. Nature communications. 2024;15(1):6516. doi:10.1038/s41467-024-50613-5

Cell Painting Gallery: an open resource for image-based profiling.

Weisbart E, Kumar A, Arevalo J, Carpenter AE, Cimini BA, Singh S. Cell Painting Gallery: an open resource for image-based profiling. Nature methods. 2024. doi:10.1038/s41592-024-02399-z

The crucial role of bioimage analysts in scientific research and publication.

Cimini BA, Bankhead P, D’Antuono R, et al. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science. 2024;137(20). doi:10.1242/jcs.262322

Cell Painting: a decade of discovery and innovation in cellular imaging.

Seal S, Trapotsi MA, Spjuth O, et al. Cell Painting: a decade of discovery and innovation in cellular imaging. Nature methods. 2024. doi:10.1038/s41592-024-02528-8

Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization.

Garcia-Fossa F, Cruz MC, Haghighi M, et al. Interpreting Image-based Profiles using Similarity Clustering and Single-Cell Visualization. Current protocols. 2023;3(3):e713. doi:10.1002/cpz1.713