Cimini BA, Chandrasekaran SN, Kost-Alimova M, et al. Optimizing the Cell Painting assay for image-based profiling. Nature protocols. 2023. doi:10.1038/s41596-023-00840-9
Imaging Platform
Senft RA, Diaz-Rohrer B, Colarusso P, et al. A biologist’s guide to planning and performing quantitative bioimaging experiments. PLoS biology. 2023;21(6):e3002167. doi:10.1371/journal.pbio.3002167
Moore J, Basurto-Lozada D, Besson S, et al. OME-Zarr: a cloud-optimized bioimaging file format with international community support. Histochemistry and cell biology. 2023. doi:10.1007/s00418-023-02209-1
Cimini BA, Eliceiri KW. The Twenty Questions of bioimage object analysis. Nature methods. 2023;20(7):976-978. doi:10.1038/s41592-023-01919-7
Carpenter AE, Cimini BA, Eliceiri KW. Smart microscopes of the future. Nature methods. 2023;20(7):962-964. doi:10.1038/s41592-023-01912-0
Yu S, Kalinin AA, Paraskevopoulou MD, et al. Integrating inflammatory biomarker analysis and artificial intelligence-enabled image-based profiling to identify drug targets for intestinal fibrosis. Cell chemical biology. 2023. doi:10.1016/j.chembiol.2023.06.014
Kelley ME, Berman AY, Stirling DR, et al. High-content microscopy reveals a morphological signature of bortezomib resistance. eLife. 2023;12. doi:10.7554/eLife.91362
Weisbart E, Tromans-Coia C, Diaz-Rohrer B, et al. CellProfiler plugins -- an easy image analysis platform integration for containers and Python tools. ArXiv. 2023.
Ouyang W, Eliceiri KW, Cimini BA. Moving beyond the desktop: prospects for practical bioimage analysis via the web. Frontiers in bioinformatics. 2023;3:1233748. doi:10.3389/fbinf.2023.1233748
Laber S, Strobel S, Mercader JM, et al. Discovering cellular programs of intrinsic and extrinsic drivers of metabolic traits using LipocyteProfiler. Cell genomics. 2023;3(7):100346. doi:10.1016/j.xgen.2023.100346