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Imaging Platform

A versatile information retrieval framework for evaluating profile strength and similarity.

Kalinin AA, Arevalo J, Serrano E, et al. A versatile information retrieval framework for evaluating profile strength and similarity. Nature communications. 2025;16(1):5181. doi:10.1038/s41467-025-60306-2

Morphological map of under- and overexpression of genes in human cells.

Chandrasekaran SN, Alix E, Arevalo J, et al. Morphological map of under- and overexpression of genes in human cells. Nature methods. 2025;22(8):1742-1752. doi:10.1038/s41592-025-02753-9

Live-cell painting: Image-based profiling in live cells using acridine orange.

Garcia-Fossa F, Moraes-Lacerda T, Rodrigues-da-Silva M, et al. Live-cell painting: Image-based profiling in live cells using acridine orange. Molecular biology of the cell. 2025;36(7):mr7. doi:10.1091/mbc.E24-07-0308

Alternate dyes for image-based profiling assays.

Sivagurunathan S, Byrne P, Muñoz AF, et al. Alternate dyes for image-based profiling assays. SLAS discovery : advancing life sciences R & D. 2025;36:100268. doi:10.1016/j.slasd.2025.100268

Calibrated prediction of scarce adverse drug reaction labels with conditional neural processes,

García-Ortegón M, Seal S, Singh S, Bender A, Bacallado S. Calibrated prediction of scarce adverse drug reaction labels with conditional neural processes,. In: 2024 Workshop on Data-Centric Machine Learning Research, International Conference of Machine Learning. bioRxiv; 2024. doi:10.1101/2024.06.07.598036

The crucial role of bioimage analysts in scientific research and publication.

Cimini BA, Bankhead P, D’Antuono R, et al. The crucial role of bioimage analysts in scientific research and publication. Journal of cell science. 2024;137(20). doi:10.1242/jcs.262322

Cell Painting Gallery: an open resource for image-based profiling.

Weisbart E, Kumar A, Arevalo J, Carpenter AE, Cimini BA, Singh S. Cell Painting Gallery: an open resource for image-based profiling. Nature methods. 2024. doi:10.1038/s41592-024-02399-z

Tyche: Stochastic In-Context Learning for Medical Image Segmentation

Rakic M, Wong HE, Ortiz JJG, Cimini B, Guttag J, Dalca AV. Tyche: Stochastic In-Context Learning for Medical Image Segmentation. In: IEEE CVF Computer Vision and Pattern Recognition Conference (CVPR). arXiv; 2024. doi:10.48550/arXiv.2401.13650

A postdoctoral training program in bioimage analysis.

Cimini BA, Tromans-Coia C, Stirling DR, et al. A postdoctoral training program in bioimage analysis. Molecular biology of the cell. 2024;35(9):pe2. doi:10.1091/mbc.E24-05-0214

Pervasive mislocalization of pathogenic coding variants underlying human disorders.

Lacoste J, Haghighi M, Haider S, et al. Pervasive mislocalization of pathogenic coding variants underlying human disorders. Cell. 2024. doi:10.1016/j.cell.2024.09.003