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Imaging Platform
Caicedo J, McQuin C, Goodman A, Singh S, Carpenter A. Weakly Supervised Learning of Single-Cell Feature Embeddings. Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition. 2018;2018:9309-9318. doi:10.1109/CVPR.2018.00970
Vasilevich AS, Mourcin F, Mentink A, et al. Designed Surface Topographies Control ICAM-1 Expression in Tonsil-Derived Human Stromal Cells. Front Bioeng Biotechnol. 2018;6:87. doi:10.3389/fbioe.2018.00087
Becker T, Caicedo J, Singer S, weckmann M, AE C. Combining morphological and migration profiles of in vitro time-lapse data. In: 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018). ; 2018. doi:10.1109/ISBI.2018.8363731
Bray MA, Carpenter AE. Quality Control for High-Throughput Imaging Experiments Using Machine Learning in Cellprofiler. Methods Mol Biol. 2018;1683:89-112. doi:10.1007/978-1-4939-7357-6_7
Bray MA, Gustafsdottir SM, Rohban MH, et al. A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay. Gigascience. 2017;6(12):1-5. doi:10.1093/gigascience/giw014
Eulenberg P, Köhler N, Blasi T, et al. Reconstructing cell cycle and disease progression using deep learning. Nat Commun. 2017;8(1):463. doi:10.1038/s41467-017-00623-3
Caicedo JC, Cooper S, Heigwer F, et al. Data-analysis strategies for image-based cell profiling. Nat Methods. 2017;14(9):849-863. doi:10.1038/nmeth.4397
Hulshof FFB, Papenburg B, Vasilevich A, et al. Mining for osteogenic surface topographies: In silico design to in vivo osseo-integration. Biomaterials. 2017;137:49-60. doi:10.1016/j.biomaterials.2017.05.020
Barczak AK, Avraham R, Singh S, et al. Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence. PLoS Pathog. 2017;13(5):e1006363. doi:10.1371/journal.ppat.1006363