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Publications

History of tuberculosis disease is associated with genetic regulatory variation in Peruvians.

Suliman S, Nieto-Caballero VE, Asgari S, et al. History of tuberculosis disease is associated with genetic regulatory variation in Peruvians. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.20.23291558

Integrative metabolomics differentiate coronary artery disease, peripheral artery disease, and venous thromboembolism risks.

Lee J, Gilliland T, Koyama S, et al. Integrative metabolomics differentiate coronary artery disease, peripheral artery disease, and venous thromboembolism risks. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.21.23291103

Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis.

Shiau C, Cao J, Gregory MT, et al. Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.28.546848

Multi-omics characterization of partial chemical reprogramming reveals evidence of cell rejuvenation.

Mitchell W, Goeminne LJE, Tyshkovskiy A, et al. Multi-omics characterization of partial chemical reprogramming reveals evidence of cell rejuvenation. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.30.546730

CHARR efficiently estimates contamination from DNA sequencing data.

Lu W, Gauthier LD, Poterba T, et al. CHARR efficiently estimates contamination from DNA sequencing data. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.28.545801

MAPS: Pathologist-level cell type annotation from tissue images through machine learning.

Shaban M, Bai Y, Qiu H, et al. MAPS: Pathologist-level cell type annotation from tissue images through machine learning. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.25.546474

Interaction molecular QTL mapping discovers cellular and environmental modifiers of genetic regulatory effects.

Kasela S, Aguet F, Kim-Hellmuth S, et al. Interaction molecular QTL mapping discovers cellular and environmental modifiers of genetic regulatory effects. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.26.546528

SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis.

Akshay A, Katoch M, Abedi M, et al. SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis. bioRxiv : the preprint server for biology. 2023. doi:10.1101/2023.06.28.533479

SARS-CoV-2 virologic rebound with nirmatrelvir-ritonavir therapy.

Edelstein GE, Boucau J, Uddin R, et al. SARS-CoV-2 virologic rebound with nirmatrelvir-ritonavir therapy. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.23.23288598

Rare variants in long non-coding RNAs are associated with blood lipid levels in the TOPMed Whole Genome Sequencing Study.

Wang Y, Selvaraj MS, Li X, et al. Rare variants in long non-coding RNAs are associated with blood lipid levels in the TOPMed Whole Genome Sequencing Study. medRxiv : the preprint server for health sciences. 2023. doi:10.1101/2023.06.28.23291966